Hb_013874_010

Information

Type -
Description -
Location Contig13874: 1775-10441
Sequence    

Annotation

kegg
ID sly:104647507
description uncharacterized LOC104647507
nr
ID XP_010321238.1
description PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013874_010 0.0 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
2 Hb_011114_050 0.0026360766 - - -
3 Hb_017279_030 0.0033116056 - - -
4 Hb_003401_040 0.0067288902 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
5 Hb_053575_010 0.0108965897 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_028105_020 0.0145274657 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
7 Hb_162933_010 0.0157154383 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_003463_040 0.0181556743 - - -
9 Hb_042795_010 0.0201398719 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_003694_070 0.0226322238 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
11 Hb_007111_020 0.0267893205 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
12 Hb_024128_010 0.0296009975 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
13 Hb_117252_010 0.030594994 - - hypothetical protein [Pseudomonas tolaasii]
14 Hb_139518_020 0.0316713993 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_002417_040 0.0327319727 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_047623_010 0.0343157151 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
17 Hb_171554_060 0.0364807139 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
18 Hb_019299_040 0.044816196 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
19 Hb_086455_010 0.0498772121 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
20 Hb_002628_030 0.0509725996 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_013874_010 Hb_013874_010 Hb_011114_050 Hb_011114_050 Hb_013874_010--Hb_011114_050 Hb_017279_030 Hb_017279_030 Hb_013874_010--Hb_017279_030 Hb_003401_040 Hb_003401_040 Hb_013874_010--Hb_003401_040 Hb_053575_010 Hb_053575_010 Hb_013874_010--Hb_053575_010 Hb_028105_020 Hb_028105_020 Hb_013874_010--Hb_028105_020 Hb_162933_010 Hb_162933_010 Hb_013874_010--Hb_162933_010 Hb_011114_050--Hb_003401_040 Hb_011114_050--Hb_017279_030 Hb_011114_050--Hb_053575_010 Hb_011114_050--Hb_028105_020 Hb_042795_010 Hb_042795_010 Hb_011114_050--Hb_042795_010 Hb_017279_030--Hb_003401_040 Hb_017279_030--Hb_028105_020 Hb_017279_030--Hb_162933_010 Hb_017279_030--Hb_053575_010 Hb_003401_040--Hb_053575_010 Hb_003401_040--Hb_042795_010 Hb_003401_040--Hb_028105_020 Hb_053575_010--Hb_042795_010 Hb_117252_010 Hb_117252_010 Hb_053575_010--Hb_117252_010 Hb_028105_020--Hb_162933_010 Hb_003463_040 Hb_003463_040 Hb_028105_020--Hb_003463_040 Hb_003694_070 Hb_003694_070 Hb_028105_020--Hb_003694_070 Hb_007111_020 Hb_007111_020 Hb_028105_020--Hb_007111_020 Hb_162933_010--Hb_003463_040 Hb_162933_010--Hb_003694_070 Hb_162933_010--Hb_007111_020 Hb_024128_010 Hb_024128_010 Hb_162933_010--Hb_024128_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0323715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0999366

CAGE analysis