Hb_165958_010

Information

Type -
Description -
Location Contig165958: 4470-9111
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165958_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_003245_010 0.0003315123 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_000541_010 0.0041639004 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_117252_010 0.03452722 - - hypothetical protein [Pseudomonas tolaasii]
5 Hb_042795_010 0.0449776953 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_053575_010 0.0542104689 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_003401_040 0.058371404 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
8 Hb_011114_050 0.062456321 - - -
9 Hb_013874_010 0.0650866444 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_017279_030 0.0683902716 - - -
11 Hb_041476_010 0.0759567952 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
12 Hb_028105_020 0.0795727568 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_162933_010 0.0807566077 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_003463_040 0.0831880178 - - -
15 Hb_003694_070 0.0876471054 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
16 Hb_007111_020 0.0917864911 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
17 Hb_024128_010 0.0945853603 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_139518_020 0.0966458982 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_002417_040 0.0977012754 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_047623_010 0.0992770764 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]

Gene co-expression network

sample Hb_165958_010 Hb_165958_010 Hb_003245_010 Hb_003245_010 Hb_165958_010--Hb_003245_010 Hb_000541_010 Hb_000541_010 Hb_165958_010--Hb_000541_010 Hb_117252_010 Hb_117252_010 Hb_165958_010--Hb_117252_010 Hb_042795_010 Hb_042795_010 Hb_165958_010--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_165958_010--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_165958_010--Hb_003401_040 Hb_003245_010--Hb_000541_010 Hb_003245_010--Hb_117252_010 Hb_003245_010--Hb_042795_010 Hb_003245_010--Hb_053575_010 Hb_003245_010--Hb_003401_040 Hb_000541_010--Hb_117252_010 Hb_000541_010--Hb_042795_010 Hb_000541_010--Hb_053575_010 Hb_000541_010--Hb_003401_040 Hb_117252_010--Hb_042795_010 Hb_117252_010--Hb_053575_010 Hb_117252_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_117252_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_117252_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_117252_010--Hb_017279_030 Hb_042795_010--Hb_053575_010 Hb_042795_010--Hb_003401_040 Hb_042795_010--Hb_011114_050 Hb_042795_010--Hb_013874_010 Hb_042795_010--Hb_017279_030 Hb_053575_010--Hb_003401_040 Hb_053575_010--Hb_011114_050 Hb_053575_010--Hb_013874_010 Hb_053575_010--Hb_017279_030 Hb_003401_040--Hb_011114_050 Hb_003401_040--Hb_013874_010 Hb_003401_040--Hb_017279_030 Hb_028105_020 Hb_028105_020 Hb_003401_040--Hb_028105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00752796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0164967

CAGE analysis