Hb_000541_010

Information

Type -
Description -
Location Contig541: 37-5240
Sequence    

Annotation

kegg
ID cam:101498181
description genome polyprotein-like
nr
ID AHC13197.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID V9QEC8
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000541_010 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_003245_010 0.0038323906 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_165958_010 0.0041639004 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_117252_010 0.0386884788 - - hypothetical protein [Pseudomonas tolaasii]
5 Hb_042795_010 0.049137171 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_053575_010 0.0583679643 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_003401_040 0.0625278791 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
8 Hb_011114_050 0.0666117155 - - -
9 Hb_013874_010 0.069241301 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_041476_010 0.0718024897 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
11 Hb_017279_030 0.0725439545 - - -
12 Hb_028105_020 0.0837227458 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_162933_010 0.084906169 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_003463_040 0.0873366782 - - -
15 Hb_003694_070 0.0917940343 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
16 Hb_007111_020 0.0959317198 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
17 Hb_024128_010 0.0987293879 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_139518_020 0.1007890146 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_002417_040 0.1018439163 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_047623_010 0.103418996 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]

Gene co-expression network

sample Hb_000541_010 Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_000541_010--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_000541_010--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_000541_010--Hb_117252_010 Hb_042795_010 Hb_042795_010 Hb_000541_010--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_000541_010--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_000541_010--Hb_003401_040 Hb_003245_010--Hb_165958_010 Hb_003245_010--Hb_117252_010 Hb_003245_010--Hb_042795_010 Hb_003245_010--Hb_053575_010 Hb_003245_010--Hb_003401_040 Hb_165958_010--Hb_117252_010 Hb_165958_010--Hb_042795_010 Hb_165958_010--Hb_053575_010 Hb_165958_010--Hb_003401_040 Hb_117252_010--Hb_042795_010 Hb_117252_010--Hb_053575_010 Hb_117252_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_117252_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_117252_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_117252_010--Hb_017279_030 Hb_042795_010--Hb_053575_010 Hb_042795_010--Hb_003401_040 Hb_042795_010--Hb_011114_050 Hb_042795_010--Hb_013874_010 Hb_042795_010--Hb_017279_030 Hb_053575_010--Hb_003401_040 Hb_053575_010--Hb_011114_050 Hb_053575_010--Hb_013874_010 Hb_053575_010--Hb_017279_030 Hb_003401_040--Hb_011114_050 Hb_003401_040--Hb_013874_010 Hb_003401_040--Hb_017279_030 Hb_028105_020 Hb_028105_020 Hb_003401_040--Hb_028105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0216071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0463611

CAGE analysis