Hb_005656_130

Information

Type -
Description -
Location Contig5656: 101545-102204
Sequence    

Annotation

kegg
ID rcu:RCOM_0205160
description calcium binding protein/cast, putative
nr
ID XP_012077495.1
description PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
swissprot
ID Q10LX4
description Probable calcium-binding protein CML27 OS=Oryza sativa subsp. japonica GN=CML27 PE=2 SV=1
trembl
ID A0A067KEJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06994 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_130 0.0 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
2 Hb_003388_070 0.1926138137 - - 60S ribosomal protein L32A [Hevea brasiliensis]
3 Hb_001231_010 0.228331285 - - calcium-binding family protein [Populus trichocarpa]
4 Hb_003371_050 0.2323303199 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010171_010 0.2344806721 - - hypothetical protein VITISV_033646 [Vitis vinifera]
6 Hb_000086_540 0.2361880723 - - -
7 Hb_166230_010 0.236787583 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_004048_030 0.2410906079 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
9 Hb_145745_040 0.2518006459 - - Cell wall-associated hydrolase [Medicago truncatula]
10 Hb_000832_270 0.2518326274 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000483_320 0.2532693435 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
12 Hb_002006_010 0.2655616277 - - Adenine nucleotide alpha hydrolases-like superfamily protein, putative isoform 1 [Theobroma cacao]
13 Hb_004464_040 0.2697916822 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
14 Hb_000163_190 0.2700005327 - - PREDICTED: 21 kDa protein [Populus euphratica]
15 Hb_000210_200 0.2726106429 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_001814_060 0.2728459725 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
17 Hb_000608_150 0.2735857942 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
18 Hb_020648_030 0.2744934408 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
19 Hb_007237_100 0.2758753599 - - DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
20 Hb_002243_020 0.2763072829 - - PREDICTED: uncharacterized protein LOC105642097 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005656_130 Hb_005656_130 Hb_003388_070 Hb_003388_070 Hb_005656_130--Hb_003388_070 Hb_001231_010 Hb_001231_010 Hb_005656_130--Hb_001231_010 Hb_003371_050 Hb_003371_050 Hb_005656_130--Hb_003371_050 Hb_010171_010 Hb_010171_010 Hb_005656_130--Hb_010171_010 Hb_000086_540 Hb_000086_540 Hb_005656_130--Hb_000086_540 Hb_166230_010 Hb_166230_010 Hb_005656_130--Hb_166230_010 Hb_145745_040 Hb_145745_040 Hb_003388_070--Hb_145745_040 Hb_000331_530 Hb_000331_530 Hb_003388_070--Hb_000331_530 Hb_000210_200 Hb_000210_200 Hb_003388_070--Hb_000210_200 Hb_006054_040 Hb_006054_040 Hb_003388_070--Hb_006054_040 Hb_004048_030 Hb_004048_030 Hb_003388_070--Hb_004048_030 Hb_000832_270 Hb_000832_270 Hb_001231_010--Hb_000832_270 Hb_000327_260 Hb_000327_260 Hb_001231_010--Hb_000327_260 Hb_000539_040 Hb_000539_040 Hb_001231_010--Hb_000539_040 Hb_001728_110 Hb_001728_110 Hb_001231_010--Hb_001728_110 Hb_007479_010 Hb_007479_010 Hb_001231_010--Hb_007479_010 Hb_137222_010 Hb_137222_010 Hb_001231_010--Hb_137222_010 Hb_000331_050 Hb_000331_050 Hb_003371_050--Hb_000331_050 Hb_003371_050--Hb_145745_040 Hb_000120_630 Hb_000120_630 Hb_003371_050--Hb_000120_630 Hb_000608_150 Hb_000608_150 Hb_003371_050--Hb_000608_150 Hb_000483_320 Hb_000483_320 Hb_003371_050--Hb_000483_320 Hb_001545_010 Hb_001545_010 Hb_003371_050--Hb_001545_010 Hb_000275_100 Hb_000275_100 Hb_010171_010--Hb_000275_100 Hb_011649_040 Hb_011649_040 Hb_010171_010--Hb_011649_040 Hb_145745_020 Hb_145745_020 Hb_010171_010--Hb_145745_020 Hb_010171_010--Hb_000483_320 Hb_007237_100 Hb_007237_100 Hb_010171_010--Hb_007237_100 Hb_000915_190 Hb_000915_190 Hb_010171_010--Hb_000915_190 Hb_000086_540--Hb_001545_010 Hb_000007_030 Hb_000007_030 Hb_000086_540--Hb_000007_030 Hb_000086_540--Hb_000608_150 Hb_000086_540--Hb_000331_530 Hb_001777_030 Hb_001777_030 Hb_000086_540--Hb_001777_030 Hb_005063_060 Hb_005063_060 Hb_000086_540--Hb_005063_060 Hb_002243_020 Hb_002243_020 Hb_166230_010--Hb_002243_020 Hb_002093_020 Hb_002093_020 Hb_166230_010--Hb_002093_020 Hb_001751_050 Hb_001751_050 Hb_166230_010--Hb_001751_050 Hb_117807_020 Hb_117807_020 Hb_166230_010--Hb_117807_020 Hb_010407_090 Hb_010407_090 Hb_166230_010--Hb_010407_090 Hb_000002_140 Hb_000002_140 Hb_166230_010--Hb_000002_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.11519 0.0388214 0 0.0519742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.135605

CAGE analysis