Hb_000086_540

Information

Type -
Description -
Location Contig86: 450054-455409
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_540 0.0 - - -
2 Hb_001545_010 0.176203139 - - PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]
3 Hb_000007_030 0.193716772 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000608_150 0.2058580488 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
5 Hb_000331_530 0.214228281 - - PREDICTED: callose synthase 10 isoform X1 [Jatropha curcas]
6 Hb_001777_030 0.2285758237 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
7 Hb_005063_060 0.2292496185 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
8 Hb_001231_010 0.2333044563 - - calcium-binding family protein [Populus trichocarpa]
9 Hb_005656_130 0.2361880723 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
10 Hb_010068_090 0.2389087154 - - hypothetical protein JCGZ_00885 [Jatropha curcas]
11 Hb_002842_010 0.240542253 - - sulfate transporter, putative [Ricinus communis]
12 Hb_007718_030 0.2423648358 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_000127_100 0.2430008403 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
14 Hb_006106_010 0.2430467212 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
15 Hb_000832_270 0.2441924566 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003494_090 0.2443190478 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
17 Hb_003373_050 0.246079749 - - receptor protein kinase zmpk1, putative [Ricinus communis]
18 Hb_001728_110 0.2462171004 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
19 Hb_001115_070 0.2467840647 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
20 Hb_000130_140 0.2470927708 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_540 Hb_000086_540 Hb_001545_010 Hb_001545_010 Hb_000086_540--Hb_001545_010 Hb_000007_030 Hb_000007_030 Hb_000086_540--Hb_000007_030 Hb_000608_150 Hb_000608_150 Hb_000086_540--Hb_000608_150 Hb_000331_530 Hb_000331_530 Hb_000086_540--Hb_000331_530 Hb_001777_030 Hb_001777_030 Hb_000086_540--Hb_001777_030 Hb_005063_060 Hb_005063_060 Hb_000086_540--Hb_005063_060 Hb_000904_120 Hb_000904_120 Hb_001545_010--Hb_000904_120 Hb_003723_050 Hb_003723_050 Hb_001545_010--Hb_003723_050 Hb_125573_010 Hb_125573_010 Hb_001545_010--Hb_125573_010 Hb_000684_070 Hb_000684_070 Hb_001545_010--Hb_000684_070 Hb_001545_010--Hb_000608_150 Hb_147028_010 Hb_147028_010 Hb_001545_010--Hb_147028_010 Hb_000787_210 Hb_000787_210 Hb_000007_030--Hb_000787_210 Hb_000007_030--Hb_005063_060 Hb_002814_010 Hb_002814_010 Hb_000007_030--Hb_002814_010 Hb_004291_050 Hb_004291_050 Hb_000007_030--Hb_004291_050 Hb_000208_270 Hb_000208_270 Hb_000007_030--Hb_000208_270 Hb_020141_030 Hb_020141_030 Hb_000007_030--Hb_020141_030 Hb_001819_020 Hb_001819_020 Hb_000608_150--Hb_001819_020 Hb_001231_010 Hb_001231_010 Hb_000608_150--Hb_001231_010 Hb_145745_040 Hb_145745_040 Hb_000608_150--Hb_145745_040 Hb_000083_080 Hb_000083_080 Hb_000608_150--Hb_000083_080 Hb_001728_110 Hb_001728_110 Hb_000608_150--Hb_001728_110 Hb_000331_530--Hb_001777_030 Hb_000538_250 Hb_000538_250 Hb_000331_530--Hb_000538_250 Hb_006106_010 Hb_006106_010 Hb_000331_530--Hb_006106_010 Hb_000429_240 Hb_000429_240 Hb_000331_530--Hb_000429_240 Hb_006188_020 Hb_006188_020 Hb_000331_530--Hb_006188_020 Hb_003767_060 Hb_003767_060 Hb_001777_030--Hb_003767_060 Hb_002818_160 Hb_002818_160 Hb_001777_030--Hb_002818_160 Hb_000167_100 Hb_000167_100 Hb_001777_030--Hb_000167_100 Hb_001777_030--Hb_006106_010 Hb_000031_320 Hb_000031_320 Hb_001777_030--Hb_000031_320 Hb_000186_180 Hb_000186_180 Hb_001777_030--Hb_000186_180 Hb_001775_100 Hb_001775_100 Hb_005063_060--Hb_001775_100 Hb_001257_110 Hb_001257_110 Hb_005063_060--Hb_001257_110 Hb_002003_130 Hb_002003_130 Hb_005063_060--Hb_002003_130 Hb_119600_030 Hb_119600_030 Hb_005063_060--Hb_119600_030 Hb_004117_200 Hb_004117_200 Hb_005063_060--Hb_004117_200 Hb_001584_210 Hb_001584_210 Hb_005063_060--Hb_001584_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0141587 0.038888 0.0268807 0 0.0177474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0635125

CAGE analysis