Hb_001545_010

Information

Type -
Description -
Location Contig1545: 16080-16532
Sequence    

Annotation

kegg
ID csv:101204250
description protein HOS4-like
nr
ID XP_011648560.1
description PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0LY91
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G700670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_010 0.0 - - PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]
2 Hb_000904_120 0.1448625348 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003723_050 0.1481589085 - - conserved hypothetical protein [Ricinus communis]
4 Hb_125573_010 0.1483521988 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_000684_070 0.16085086 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
6 Hb_000608_150 0.1610728085 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
7 Hb_147028_010 0.1636967201 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
8 Hb_001158_130 0.1637305841 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
9 Hb_000710_030 0.1656110402 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
10 Hb_000008_070 0.1672929574 - - kinase, putative [Ricinus communis]
11 Hb_004220_010 0.1673356622 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
12 Hb_000617_360 0.1682132833 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001199_110 0.1687979409 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
14 Hb_000031_180 0.1718402189 - - sarcosine oxidase, putative [Ricinus communis]
15 Hb_002119_100 0.1722702399 - - cytochrome B561, putative [Ricinus communis]
16 Hb_000329_780 0.1724469354 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
17 Hb_005694_160 0.1725825704 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006615_090 0.1730036672 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
19 Hb_000881_020 0.1760666197 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
20 Hb_000086_540 0.176203139 - - -

Gene co-expression network

sample Hb_001545_010 Hb_001545_010 Hb_000904_120 Hb_000904_120 Hb_001545_010--Hb_000904_120 Hb_003723_050 Hb_003723_050 Hb_001545_010--Hb_003723_050 Hb_125573_010 Hb_125573_010 Hb_001545_010--Hb_125573_010 Hb_000684_070 Hb_000684_070 Hb_001545_010--Hb_000684_070 Hb_000608_150 Hb_000608_150 Hb_001545_010--Hb_000608_150 Hb_147028_010 Hb_147028_010 Hb_001545_010--Hb_147028_010 Hb_000031_180 Hb_000031_180 Hb_000904_120--Hb_000031_180 Hb_012098_160 Hb_012098_160 Hb_000904_120--Hb_012098_160 Hb_007163_100 Hb_007163_100 Hb_000904_120--Hb_007163_100 Hb_015561_010 Hb_015561_010 Hb_000904_120--Hb_015561_010 Hb_000329_780 Hb_000329_780 Hb_000904_120--Hb_000329_780 Hb_002119_100 Hb_002119_100 Hb_000904_120--Hb_002119_100 Hb_003723_050--Hb_002119_100 Hb_000103_200 Hb_000103_200 Hb_003723_050--Hb_000103_200 Hb_003723_050--Hb_000684_070 Hb_000358_260 Hb_000358_260 Hb_003723_050--Hb_000358_260 Hb_000915_170 Hb_000915_170 Hb_003723_050--Hb_000915_170 Hb_004459_010 Hb_004459_010 Hb_003723_050--Hb_004459_010 Hb_125573_010--Hb_000904_120 Hb_012395_240 Hb_012395_240 Hb_125573_010--Hb_012395_240 Hb_000922_200 Hb_000922_200 Hb_125573_010--Hb_000922_200 Hb_001638_200 Hb_001638_200 Hb_125573_010--Hb_001638_200 Hb_006816_380 Hb_006816_380 Hb_125573_010--Hb_006816_380 Hb_001080_190 Hb_001080_190 Hb_125573_010--Hb_001080_190 Hb_001158_130 Hb_001158_130 Hb_000684_070--Hb_001158_130 Hb_000684_070--Hb_002119_100 Hb_001199_110 Hb_001199_110 Hb_000684_070--Hb_001199_110 Hb_007483_090 Hb_007483_090 Hb_000684_070--Hb_007483_090 Hb_000684_070--Hb_000103_200 Hb_000599_150 Hb_000599_150 Hb_000684_070--Hb_000599_150 Hb_001819_020 Hb_001819_020 Hb_000608_150--Hb_001819_020 Hb_001231_010 Hb_001231_010 Hb_000608_150--Hb_001231_010 Hb_145745_040 Hb_145745_040 Hb_000608_150--Hb_145745_040 Hb_000083_080 Hb_000083_080 Hb_000608_150--Hb_000083_080 Hb_001728_110 Hb_001728_110 Hb_000608_150--Hb_001728_110 Hb_001141_100 Hb_001141_100 Hb_147028_010--Hb_001141_100 Hb_028491_010 Hb_028491_010 Hb_147028_010--Hb_028491_010 Hb_000803_080 Hb_000803_080 Hb_147028_010--Hb_000803_080 Hb_001277_130 Hb_001277_130 Hb_147028_010--Hb_001277_130 Hb_086300_010 Hb_086300_010 Hb_147028_010--Hb_086300_010 Hb_001735_040 Hb_001735_040 Hb_147028_010--Hb_001735_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0583108 0.32859 0.400905 0 0.0608514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.454836

CAGE analysis