Hb_003723_050

Information

Type -
Description -
Location Contig3723: 43131-43751
Sequence    

Annotation

kegg
ID rcu:RCOM_1134830
description hypothetical protein
nr
ID XP_002517719.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVF0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1134830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38069: 43434-43783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003723_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002119_100 0.0751694076 - - cytochrome B561, putative [Ricinus communis]
3 Hb_000103_200 0.0803983037 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_000684_070 0.0851072751 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
5 Hb_000358_260 0.0867246808 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
6 Hb_000915_170 0.0884651054 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
7 Hb_004459_010 0.091212 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
8 Hb_007483_090 0.0915343462 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000230_300 0.0922149026 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
10 Hb_003417_050 0.09379886 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_006816_380 0.0946034979 - - PREDICTED: kinesin-4-like [Jatropha curcas]
12 Hb_000928_030 0.0955863981 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
13 Hb_000232_040 0.0972673645 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
14 Hb_002221_060 0.0988605637 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
15 Hb_002740_050 0.100798005 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
16 Hb_001981_050 0.1023490807 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
17 Hb_128986_010 0.1025725093 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002062_010 0.1032763303 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
19 Hb_005762_010 0.1041529855 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
20 Hb_052530_020 0.1058352711 - - cytochrome B5 isoform 1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003723_050 Hb_003723_050 Hb_002119_100 Hb_002119_100 Hb_003723_050--Hb_002119_100 Hb_000103_200 Hb_000103_200 Hb_003723_050--Hb_000103_200 Hb_000684_070 Hb_000684_070 Hb_003723_050--Hb_000684_070 Hb_000358_260 Hb_000358_260 Hb_003723_050--Hb_000358_260 Hb_000915_170 Hb_000915_170 Hb_003723_050--Hb_000915_170 Hb_004459_010 Hb_004459_010 Hb_003723_050--Hb_004459_010 Hb_007483_090 Hb_007483_090 Hb_002119_100--Hb_007483_090 Hb_000329_780 Hb_000329_780 Hb_002119_100--Hb_000329_780 Hb_002062_010 Hb_002062_010 Hb_002119_100--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_002119_100--Hb_003417_050 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050 Hb_015561_010 Hb_015561_010 Hb_002119_100--Hb_015561_010 Hb_004137_040 Hb_004137_040 Hb_000103_200--Hb_004137_040 Hb_000230_300 Hb_000230_300 Hb_000103_200--Hb_000230_300 Hb_002221_060 Hb_002221_060 Hb_000103_200--Hb_002221_060 Hb_005762_010 Hb_005762_010 Hb_000103_200--Hb_005762_010 Hb_000928_030 Hb_000928_030 Hb_000103_200--Hb_000928_030 Hb_000028_190 Hb_000028_190 Hb_000103_200--Hb_000028_190 Hb_001158_130 Hb_001158_130 Hb_000684_070--Hb_001158_130 Hb_000684_070--Hb_002119_100 Hb_001199_110 Hb_001199_110 Hb_000684_070--Hb_001199_110 Hb_000684_070--Hb_007483_090 Hb_000684_070--Hb_000103_200 Hb_000599_150 Hb_000599_150 Hb_000684_070--Hb_000599_150 Hb_010577_020 Hb_010577_020 Hb_000358_260--Hb_010577_020 Hb_000358_260--Hb_000915_170 Hb_005833_010 Hb_005833_010 Hb_000358_260--Hb_005833_010 Hb_056506_040 Hb_056506_040 Hb_000358_260--Hb_056506_040 Hb_000358_260--Hb_000928_030 Hb_006816_380 Hb_006816_380 Hb_000358_260--Hb_006816_380 Hb_000915_170--Hb_006816_380 Hb_007904_150 Hb_007904_150 Hb_000915_170--Hb_007904_150 Hb_001981_050 Hb_001981_050 Hb_000915_170--Hb_001981_050 Hb_000915_170--Hb_002740_050 Hb_185811_010 Hb_185811_010 Hb_000915_170--Hb_185811_010 Hb_001278_120 Hb_001278_120 Hb_004459_010--Hb_001278_120 Hb_000917_300 Hb_000917_300 Hb_004459_010--Hb_000917_300 Hb_004459_010--Hb_001981_050 Hb_003855_060 Hb_003855_060 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010 Hb_000318_310 Hb_000318_310 Hb_004459_010--Hb_000318_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.175221 2.12206 3.81625 0 0.0595971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.22891

CAGE analysis