Hb_000917_300

Information

Type transcription factor
Description TF Family: bHLH
Location Contig917: 308929-311491
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11490g
description POPTRDRAFT_766018; basic helix-loop-helix family protein
nr
ID XP_011021594.1
description PREDICTED: transcription factor bHLH30-like [Populus euphratica]
swissprot
ID Q9S7Y1
description Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1
trembl
ID B9HIY4
description Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0008s11490g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62290: 308725-311587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_300 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
2 Hb_004459_010 0.0537112248 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
3 Hb_001981_050 0.0645637534 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
4 Hb_000232_040 0.069359139 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
5 Hb_000318_310 0.0697741009 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
6 Hb_185811_010 0.0700094509 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
7 Hb_132880_010 0.0710975859 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
8 Hb_001048_010 0.0739522477 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]
9 Hb_010589_010 0.074535937 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
10 Hb_095744_010 0.0751137429 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
11 Hb_002477_190 0.0783317344 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
12 Hb_001926_080 0.0784661073 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
13 Hb_012098_120 0.0786806177 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
14 Hb_029587_010 0.0792226936 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
15 Hb_002391_010 0.0796564199 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
16 Hb_000224_190 0.0801253545 - - zinc finger protein, putative [Ricinus communis]
17 Hb_001278_120 0.0809014641 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
18 Hb_144550_010 0.0839820799 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
19 Hb_000485_100 0.0855715551 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
20 Hb_003549_100 0.0866345069 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_300 Hb_000917_300 Hb_004459_010 Hb_004459_010 Hb_000917_300--Hb_004459_010 Hb_001981_050 Hb_001981_050 Hb_000917_300--Hb_001981_050 Hb_000232_040 Hb_000232_040 Hb_000917_300--Hb_000232_040 Hb_000318_310 Hb_000318_310 Hb_000917_300--Hb_000318_310 Hb_185811_010 Hb_185811_010 Hb_000917_300--Hb_185811_010 Hb_132880_010 Hb_132880_010 Hb_000917_300--Hb_132880_010 Hb_001278_120 Hb_001278_120 Hb_004459_010--Hb_001278_120 Hb_004459_010--Hb_001981_050 Hb_003855_060 Hb_003855_060 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010 Hb_004459_010--Hb_000318_310 Hb_001981_050--Hb_185811_010 Hb_001981_050--Hb_000318_310 Hb_001981_050--Hb_003855_060 Hb_007904_150 Hb_007904_150 Hb_001981_050--Hb_007904_150 Hb_002062_010 Hb_002062_010 Hb_000232_040--Hb_002062_010 Hb_001048_010 Hb_001048_010 Hb_000232_040--Hb_001048_010 Hb_002119_100 Hb_002119_100 Hb_000232_040--Hb_002119_100 Hb_000232_040--Hb_004459_010 Hb_000232_040--Hb_001981_050 Hb_000318_310--Hb_185811_010 Hb_000318_310--Hb_003855_060 Hb_000318_310--Hb_007904_150 Hb_001345_050 Hb_001345_050 Hb_185811_010--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_185811_010--Hb_072771_010 Hb_004807_010 Hb_004807_010 Hb_185811_010--Hb_004807_010 Hb_185811_010--Hb_003855_060 Hb_002073_130 Hb_002073_130 Hb_132880_010--Hb_002073_130 Hb_003549_100 Hb_003549_100 Hb_132880_010--Hb_003549_100 Hb_132880_010--Hb_095744_010 Hb_144550_010 Hb_144550_010 Hb_132880_010--Hb_144550_010 Hb_002326_010 Hb_002326_010 Hb_132880_010--Hb_002326_010 Hb_001593_040 Hb_001593_040 Hb_132880_010--Hb_001593_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.014725 0.288345 4.50609 10.2921 0.0111036 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00846044 11.5158

CAGE analysis