Hb_001048_010

Information

Type -
Description -
Location Contig1048: 13135-14460
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14570g
description POPTRDRAFT_718004; xyloglucan endotransglycosylase hydrolase 2 family protein
nr
ID XP_012079477.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]
swissprot
ID Q8LF99
description Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2
trembl
ID A0A067K7B4
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_12592 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01640: 13135-14752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001048_010 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]
2 Hb_000917_300 0.0739522477 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
3 Hb_000232_040 0.0756058211 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
4 Hb_004459_010 0.0787314598 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
5 Hb_010172_040 0.0802512738 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
6 Hb_000421_040 0.0830689667 - - Peptide transporter, putative [Ricinus communis]
7 Hb_010589_010 0.0875847243 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
8 Hb_000172_270 0.0891603721 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
9 Hb_003549_100 0.0933842524 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
10 Hb_095744_010 0.0943989089 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
11 Hb_002809_180 0.0951440462 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
12 Hb_000707_090 0.0956738282 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
13 Hb_001278_120 0.0961610028 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
14 Hb_029587_010 0.0981419707 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
15 Hb_006895_010 0.0987650267 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
16 Hb_136408_040 0.1001730546 - - PREDICTED: protein NDR1 [Jatropha curcas]
17 Hb_002062_010 0.1018749424 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
18 Hb_001140_290 0.1031807699 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
19 Hb_000485_100 0.1038465414 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
20 Hb_001097_170 0.1054862686 - - PREDICTED: protein NDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_001048_010 Hb_001048_010 Hb_000917_300 Hb_000917_300 Hb_001048_010--Hb_000917_300 Hb_000232_040 Hb_000232_040 Hb_001048_010--Hb_000232_040 Hb_004459_010 Hb_004459_010 Hb_001048_010--Hb_004459_010 Hb_010172_040 Hb_010172_040 Hb_001048_010--Hb_010172_040 Hb_000421_040 Hb_000421_040 Hb_001048_010--Hb_000421_040 Hb_010589_010 Hb_010589_010 Hb_001048_010--Hb_010589_010 Hb_000917_300--Hb_004459_010 Hb_001981_050 Hb_001981_050 Hb_000917_300--Hb_001981_050 Hb_000917_300--Hb_000232_040 Hb_000318_310 Hb_000318_310 Hb_000917_300--Hb_000318_310 Hb_185811_010 Hb_185811_010 Hb_000917_300--Hb_185811_010 Hb_132880_010 Hb_132880_010 Hb_000917_300--Hb_132880_010 Hb_002062_010 Hb_002062_010 Hb_000232_040--Hb_002062_010 Hb_002119_100 Hb_002119_100 Hb_000232_040--Hb_002119_100 Hb_000232_040--Hb_004459_010 Hb_000232_040--Hb_001981_050 Hb_001278_120 Hb_001278_120 Hb_004459_010--Hb_001278_120 Hb_004459_010--Hb_001981_050 Hb_003855_060 Hb_003855_060 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010 Hb_004459_010--Hb_000318_310 Hb_002809_180 Hb_002809_180 Hb_010172_040--Hb_002809_180 Hb_000343_070 Hb_000343_070 Hb_010172_040--Hb_000343_070 Hb_010172_040--Hb_000421_040 Hb_000172_270 Hb_000172_270 Hb_010172_040--Hb_000172_270 Hb_000707_090 Hb_000707_090 Hb_010172_040--Hb_000707_090 Hb_010172_040--Hb_001278_120 Hb_000421_040--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_000421_040--Hb_000557_080 Hb_061700_010 Hb_061700_010 Hb_000421_040--Hb_061700_010 Hb_001289_040 Hb_001289_040 Hb_000421_040--Hb_001289_040 Hb_000421_040--Hb_000172_270 Hb_001397_020 Hb_001397_020 Hb_010589_010--Hb_001397_020 Hb_029587_010 Hb_029587_010 Hb_010589_010--Hb_029587_010 Hb_001433_090 Hb_001433_090 Hb_010589_010--Hb_001433_090 Hb_003549_100 Hb_003549_100 Hb_010589_010--Hb_003549_100 Hb_000002_110 Hb_000002_110 Hb_010589_010--Hb_000002_110 Hb_001500_130 Hb_001500_130 Hb_010589_010--Hb_001500_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3945 35.4176 435.131 1414.3 11.6031 4.96643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.339583 0.356077 0.0814226 0.358804 1328.48

CAGE analysis