Hb_125573_010

Information

Type -
Description -
Location Contig125573: 685-1883
Sequence    

Annotation

kegg
ID rcu:RCOM_1216390
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002529514.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q8RWI9
description ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2
trembl
ID B9SU45
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1216390 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125573_010 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_000904_120 0.1078872638 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012395_240 0.1112491461 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
4 Hb_000922_200 0.1115197376 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
5 Hb_001638_200 0.1117472215 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
6 Hb_006816_380 0.1124449014 - - PREDICTED: kinesin-4-like [Jatropha curcas]
7 Hb_001080_190 0.1142170543 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
8 Hb_000617_360 0.1153704966 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000928_030 0.1154146721 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
10 Hb_000028_190 0.1173587329 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_001674_010 0.1173693937 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
12 Hb_000951_150 0.1217103999 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
13 Hb_017434_010 0.1229744639 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
14 Hb_004635_120 0.1229948574 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
15 Hb_004137_040 0.1233445177 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
16 Hb_001032_020 0.1242859473 - - ankyrin repeat protein [Bruguiera gymnorhiza]
17 Hb_001817_210 0.1244116885 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007617_010 0.1245814333 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
19 Hb_000103_200 0.1246807945 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_001095_020 0.1256691144 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]

Gene co-expression network

sample Hb_125573_010 Hb_125573_010 Hb_000904_120 Hb_000904_120 Hb_125573_010--Hb_000904_120 Hb_012395_240 Hb_012395_240 Hb_125573_010--Hb_012395_240 Hb_000922_200 Hb_000922_200 Hb_125573_010--Hb_000922_200 Hb_001638_200 Hb_001638_200 Hb_125573_010--Hb_001638_200 Hb_006816_380 Hb_006816_380 Hb_125573_010--Hb_006816_380 Hb_001080_190 Hb_001080_190 Hb_125573_010--Hb_001080_190 Hb_000031_180 Hb_000031_180 Hb_000904_120--Hb_000031_180 Hb_012098_160 Hb_012098_160 Hb_000904_120--Hb_012098_160 Hb_007163_100 Hb_007163_100 Hb_000904_120--Hb_007163_100 Hb_015561_010 Hb_015561_010 Hb_000904_120--Hb_015561_010 Hb_000329_780 Hb_000329_780 Hb_000904_120--Hb_000329_780 Hb_002119_100 Hb_002119_100 Hb_000904_120--Hb_002119_100 Hb_004635_120 Hb_004635_120 Hb_012395_240--Hb_004635_120 Hb_000538_090 Hb_000538_090 Hb_012395_240--Hb_000538_090 Hb_012395_240--Hb_006816_380 Hb_000928_030 Hb_000928_030 Hb_012395_240--Hb_000928_030 Hb_000000_390 Hb_000000_390 Hb_012395_240--Hb_000000_390 Hb_189208_070 Hb_189208_070 Hb_012395_240--Hb_189208_070 Hb_000951_150 Hb_000951_150 Hb_000922_200--Hb_000951_150 Hb_051663_010 Hb_051663_010 Hb_000922_200--Hb_051663_010 Hb_000922_200--Hb_000000_390 Hb_000922_200--Hb_004635_120 Hb_000922_200--Hb_001638_200 Hb_000922_200--Hb_012395_240 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_001638_200--Hb_004635_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_000009_270 Hb_000009_270 Hb_001638_200--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_001638_200--Hb_032920_020 Hb_000156_110 Hb_000156_110 Hb_001638_200--Hb_000156_110 Hb_000915_170 Hb_000915_170 Hb_006816_380--Hb_000915_170 Hb_000358_260 Hb_000358_260 Hb_006816_380--Hb_000358_260 Hb_006816_380--Hb_000928_030 Hb_052530_020 Hb_052530_020 Hb_006816_380--Hb_052530_020 Hb_000103_200 Hb_000103_200 Hb_006816_380--Hb_000103_200 Hb_007617_010 Hb_007617_010 Hb_001080_190--Hb_007617_010 Hb_001544_090 Hb_001544_090 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_001080_190--Hb_000009_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0288607 0.237456 4.48812 4.91088 0.0541398 0.241014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.063358 3.88177

CAGE analysis