Hb_145745_040

Information

Type -
Description -
Location Contig145745: 39004-39186
Sequence    

Annotation

kegg
ID mtr:MTR_4g006070
description Cell wall-associated hydrolase
nr
ID XP_003604156.1
description Cell wall-associated hydrolase [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7JVL6
description Uncharacterized protein OS=Medicago truncatula GN=MTR_4g006070 PE=4 SV=1
Gene Ontology
ID GO:0016787
description cell wall-associated hydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145745_040 0.0 - - Cell wall-associated hydrolase [Medicago truncatula]
2 Hb_000608_150 0.177054522 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
3 Hb_003371_050 0.1817480184 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000331_050 0.1818045662 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
5 Hb_000120_630 0.1830060478 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
6 Hb_003388_070 0.1871473614 - - 60S ribosomal protein L32A [Hevea brasiliensis]
7 Hb_000085_010 0.2181378583 - - zinc finger protein, putative [Ricinus communis]
8 Hb_001231_010 0.233379031 - - calcium-binding family protein [Populus trichocarpa]
9 Hb_115031_030 0.2435960071 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
10 Hb_003680_040 0.2449211763 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
11 Hb_005656_130 0.2518006459 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
12 Hb_002811_220 0.2528316948 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_006054_040 0.2553293475 - - -
14 Hb_010683_030 0.2568618412 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001266_150 0.2579556691 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
16 Hb_004447_050 0.2597725401 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
17 Hb_000352_010 0.2611830796 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
18 Hb_001221_200 0.2621085704 - - -
19 Hb_000210_200 0.2622638616 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
20 Hb_001819_020 0.264846893 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_145745_040 Hb_145745_040 Hb_000608_150 Hb_000608_150 Hb_145745_040--Hb_000608_150 Hb_003371_050 Hb_003371_050 Hb_145745_040--Hb_003371_050 Hb_000331_050 Hb_000331_050 Hb_145745_040--Hb_000331_050 Hb_000120_630 Hb_000120_630 Hb_145745_040--Hb_000120_630 Hb_003388_070 Hb_003388_070 Hb_145745_040--Hb_003388_070 Hb_000085_010 Hb_000085_010 Hb_145745_040--Hb_000085_010 Hb_001819_020 Hb_001819_020 Hb_000608_150--Hb_001819_020 Hb_001545_010 Hb_001545_010 Hb_000608_150--Hb_001545_010 Hb_001231_010 Hb_001231_010 Hb_000608_150--Hb_001231_010 Hb_000083_080 Hb_000083_080 Hb_000608_150--Hb_000083_080 Hb_001728_110 Hb_001728_110 Hb_000608_150--Hb_001728_110 Hb_003371_050--Hb_000331_050 Hb_003371_050--Hb_000120_630 Hb_003371_050--Hb_000608_150 Hb_000483_320 Hb_000483_320 Hb_003371_050--Hb_000483_320 Hb_003371_050--Hb_001545_010 Hb_000331_050--Hb_000120_630 Hb_002811_220 Hb_002811_220 Hb_000331_050--Hb_002811_220 Hb_115031_030 Hb_115031_030 Hb_000331_050--Hb_115031_030 Hb_002248_040 Hb_002248_040 Hb_000331_050--Hb_002248_040 Hb_004254_060 Hb_004254_060 Hb_000120_630--Hb_004254_060 Hb_001140_190 Hb_001140_190 Hb_000120_630--Hb_001140_190 Hb_000958_160 Hb_000958_160 Hb_000120_630--Hb_000958_160 Hb_000120_630--Hb_002811_220 Hb_000352_010 Hb_000352_010 Hb_000120_630--Hb_000352_010 Hb_005656_130 Hb_005656_130 Hb_003388_070--Hb_005656_130 Hb_000331_530 Hb_000331_530 Hb_003388_070--Hb_000331_530 Hb_000210_200 Hb_000210_200 Hb_003388_070--Hb_000210_200 Hb_006054_040 Hb_006054_040 Hb_003388_070--Hb_006054_040 Hb_004048_030 Hb_004048_030 Hb_003388_070--Hb_004048_030 Hb_000085_010--Hb_006054_040 Hb_003680_040 Hb_003680_040 Hb_000085_010--Hb_003680_040 Hb_000085_010--Hb_000352_010 Hb_081529_010 Hb_081529_010 Hb_000085_010--Hb_081529_010 Hb_012653_010 Hb_012653_010 Hb_000085_010--Hb_012653_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
312.761 326.552 7299.87 4566.05 29.7335 3464.1
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28956 0 1.96313 45.1508 3611.06

CAGE analysis