Hb_000120_630

Information

Type -
Description -
Location Contig120: 495814-508181
Sequence    

Annotation

kegg
ID vvi:100262768
description glutamate receptor 3.6
nr
ID XP_012065413.1
description PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
swissprot
ID Q9C8E7
description Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1
trembl
ID A0A067LGV3
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_22407 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06166: 495867-496015 , PASA_asmbl_06167: 496132-496878 , PASA_asmbl_06168: 496455-496878 , PASA_asmbl_06169: 497886-498225 , PASA_asmbl_06170: 498299-498700 , PASA_asmbl_06171: 498994-499252 , PASA_asmbl_06173: 499508-499980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_630 0.0 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
2 Hb_004254_060 0.1756936405 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
3 Hb_145745_040 0.1830060478 - - Cell wall-associated hydrolase [Medicago truncatula]
4 Hb_001140_190 0.1862860395 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
5 Hb_000958_160 0.1915658108 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like isoform X1 [Jatropha curcas]
6 Hb_002811_220 0.1950912842 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_000352_010 0.1951767685 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
8 Hb_059567_010 0.1957543247 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
9 Hb_003371_050 0.1963218368 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001266_150 0.2022453368 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
11 Hb_000071_060 0.206962109 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004453_160 0.2073221096 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000291_070 0.2099598314 - - conserved hypothetical protein [Ricinus communis]
14 Hb_125573_010 0.210335581 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_132840_190 0.2114324874 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
16 Hb_000925_150 0.2116394535 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
17 Hb_018133_070 0.2124436617 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
18 Hb_000031_240 0.213503018 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_004093_030 0.2136442814 - - hypothetical protein RCOM_1406750 [Ricinus communis]
20 Hb_000438_160 0.2138443504 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000120_630 Hb_000120_630 Hb_004254_060 Hb_004254_060 Hb_000120_630--Hb_004254_060 Hb_145745_040 Hb_145745_040 Hb_000120_630--Hb_145745_040 Hb_001140_190 Hb_001140_190 Hb_000120_630--Hb_001140_190 Hb_000958_160 Hb_000958_160 Hb_000120_630--Hb_000958_160 Hb_002811_220 Hb_002811_220 Hb_000120_630--Hb_002811_220 Hb_000352_010 Hb_000352_010 Hb_000120_630--Hb_000352_010 Hb_000120_930 Hb_000120_930 Hb_004254_060--Hb_000120_930 Hb_011501_010 Hb_011501_010 Hb_004254_060--Hb_011501_010 Hb_016333_010 Hb_016333_010 Hb_004254_060--Hb_016333_010 Hb_000497_250 Hb_000497_250 Hb_004254_060--Hb_000497_250 Hb_001431_090 Hb_001431_090 Hb_004254_060--Hb_001431_090 Hb_000676_360 Hb_000676_360 Hb_004254_060--Hb_000676_360 Hb_000608_150 Hb_000608_150 Hb_145745_040--Hb_000608_150 Hb_003371_050 Hb_003371_050 Hb_145745_040--Hb_003371_050 Hb_000331_050 Hb_000331_050 Hb_145745_040--Hb_000331_050 Hb_003388_070 Hb_003388_070 Hb_145745_040--Hb_003388_070 Hb_000085_010 Hb_000085_010 Hb_145745_040--Hb_000085_010 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_000438_160 Hb_000438_160 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_000071_060 Hb_000071_060 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_001817_040 Hb_001817_040 Hb_001140_190--Hb_001817_040 Hb_000258_400 Hb_000258_400 Hb_000958_160--Hb_000258_400 Hb_000089_170 Hb_000089_170 Hb_000958_160--Hb_000089_170 Hb_072952_010 Hb_072952_010 Hb_000958_160--Hb_072952_010 Hb_007218_050 Hb_007218_050 Hb_000958_160--Hb_007218_050 Hb_000816_180 Hb_000816_180 Hb_000958_160--Hb_000816_180 Hb_007576_090 Hb_007576_090 Hb_000958_160--Hb_007576_090 Hb_002942_170 Hb_002942_170 Hb_002811_220--Hb_002942_170 Hb_000002_430 Hb_000002_430 Hb_002811_220--Hb_000002_430 Hb_000416_080 Hb_000416_080 Hb_002811_220--Hb_000416_080 Hb_003750_090 Hb_003750_090 Hb_002811_220--Hb_003750_090 Hb_059567_010 Hb_059567_010 Hb_002811_220--Hb_059567_010 Hb_010288_030 Hb_010288_030 Hb_000352_010--Hb_010288_030 Hb_001680_020 Hb_001680_020 Hb_000352_010--Hb_001680_020 Hb_000352_010--Hb_001140_190 Hb_071674_010 Hb_071674_010 Hb_000352_010--Hb_071674_010 Hb_004115_010 Hb_004115_010 Hb_000352_010--Hb_004115_010 Hb_000139_040 Hb_000139_040 Hb_000352_010--Hb_000139_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.016726 0.0181046 1.09247 0.82022 0 0.188192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.036604 0.00501187 0.394918

CAGE analysis