Hb_003371_050

Information

Type -
Description -
Location Contig3371: 17923-18417
Sequence    

Annotation

kegg
ID rcu:RCOM_1775080
description hypothetical protein
nr
ID XP_002512189.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M2P8
description VQ motif-containing protein 25 OS=Arabidopsis thaliana GN=VQ25 PE=3 SV=1
trembl
ID B9REM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000331_050 0.1559563845 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
3 Hb_145745_040 0.1817480184 - - Cell wall-associated hydrolase [Medicago truncatula]
4 Hb_000120_630 0.1963218368 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
5 Hb_000608_150 0.2036645242 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
6 Hb_000483_320 0.2144245821 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
7 Hb_001545_010 0.2152855703 - - PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]
8 Hb_004254_060 0.2205264391 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
9 Hb_125573_010 0.2298460449 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_001534_130 0.2309357312 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
11 Hb_005656_130 0.2323303199 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
12 Hb_002377_010 0.2376315993 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Jatropha curcas]
13 Hb_001819_020 0.2394050559 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
14 Hb_000049_130 0.2518337529 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
15 Hb_006693_040 0.2571552239 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
16 Hb_001956_130 0.2584061884 - - catalytic, putative [Ricinus communis]
17 Hb_163566_010 0.2670399534 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
18 Hb_011649_020 0.2671208757 - - PREDICTED: uncharacterized protein LOC104212904 isoform X1 [Nicotiana sylvestris]
19 Hb_001231_010 0.2689485767 - - calcium-binding family protein [Populus trichocarpa]
20 Hb_005833_010 0.2690416747 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003371_050 Hb_003371_050 Hb_000331_050 Hb_000331_050 Hb_003371_050--Hb_000331_050 Hb_145745_040 Hb_145745_040 Hb_003371_050--Hb_145745_040 Hb_000120_630 Hb_000120_630 Hb_003371_050--Hb_000120_630 Hb_000608_150 Hb_000608_150 Hb_003371_050--Hb_000608_150 Hb_000483_320 Hb_000483_320 Hb_003371_050--Hb_000483_320 Hb_001545_010 Hb_001545_010 Hb_003371_050--Hb_001545_010 Hb_000331_050--Hb_145745_040 Hb_000331_050--Hb_000120_630 Hb_002811_220 Hb_002811_220 Hb_000331_050--Hb_002811_220 Hb_115031_030 Hb_115031_030 Hb_000331_050--Hb_115031_030 Hb_002248_040 Hb_002248_040 Hb_000331_050--Hb_002248_040 Hb_145745_040--Hb_000608_150 Hb_145745_040--Hb_000120_630 Hb_003388_070 Hb_003388_070 Hb_145745_040--Hb_003388_070 Hb_000085_010 Hb_000085_010 Hb_145745_040--Hb_000085_010 Hb_004254_060 Hb_004254_060 Hb_000120_630--Hb_004254_060 Hb_001140_190 Hb_001140_190 Hb_000120_630--Hb_001140_190 Hb_000958_160 Hb_000958_160 Hb_000120_630--Hb_000958_160 Hb_000120_630--Hb_002811_220 Hb_000352_010 Hb_000352_010 Hb_000120_630--Hb_000352_010 Hb_001819_020 Hb_001819_020 Hb_000608_150--Hb_001819_020 Hb_000608_150--Hb_001545_010 Hb_001231_010 Hb_001231_010 Hb_000608_150--Hb_001231_010 Hb_000083_080 Hb_000083_080 Hb_000608_150--Hb_000083_080 Hb_001728_110 Hb_001728_110 Hb_000608_150--Hb_001728_110 Hb_002377_010 Hb_002377_010 Hb_000483_320--Hb_002377_010 Hb_000343_080 Hb_000343_080 Hb_000483_320--Hb_000343_080 Hb_188063_040 Hb_188063_040 Hb_000483_320--Hb_188063_040 Hb_095744_010 Hb_095744_010 Hb_000483_320--Hb_095744_010 Hb_001863_470 Hb_001863_470 Hb_000483_320--Hb_001863_470 Hb_000483_320--Hb_001545_010 Hb_000904_120 Hb_000904_120 Hb_001545_010--Hb_000904_120 Hb_003723_050 Hb_003723_050 Hb_001545_010--Hb_003723_050 Hb_125573_010 Hb_125573_010 Hb_001545_010--Hb_125573_010 Hb_000684_070 Hb_000684_070 Hb_001545_010--Hb_000684_070 Hb_147028_010 Hb_147028_010 Hb_001545_010--Hb_147028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.236561 0.267704 0 0.110121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.19995

CAGE analysis