Hb_188063_040

Information

Type transcription factor
Description TF Family: TCP
Location Contig188063: 34709-35881
Sequence    

Annotation

kegg
ID rcu:RCOM_1469470
description transcription factor, putative
nr
ID XP_002514641.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FME3
description Transcription factor TCP5 OS=Arabidopsis thaliana GN=TCP5 PE=2 SV=1
trembl
ID B9RLM2
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1469470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18563: 35148-35318 , PASA_asmbl_18564: 35470-35652 , PASA_asmbl_18565: 35735-36357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188063_040 0.0 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
2 Hb_003528_100 0.0969879917 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
3 Hb_046825_010 0.1011423483 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
4 Hb_000160_120 0.1014569163 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000363_070 0.101868276 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000268_050 0.1040618912 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
7 Hb_065774_010 0.1047923398 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
8 Hb_001437_170 0.1048029265 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
9 Hb_096907_010 0.1055907199 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
10 Hb_180094_010 0.108293755 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
11 Hb_154064_010 0.1092011051 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
12 Hb_127349_020 0.1105312831 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_000140_040 0.1110290097 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
14 Hb_045260_010 0.1143347902 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
15 Hb_002391_340 0.1161344809 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
16 Hb_000540_080 0.1169707647 - - PREDICTED: laccase-17 [Jatropha curcas]
17 Hb_011362_010 0.119123754 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
18 Hb_003787_030 0.1195144613 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000115_030 0.1225973801 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
20 Hb_001790_060 0.123040087 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]

Gene co-expression network

sample Hb_188063_040 Hb_188063_040 Hb_003528_100 Hb_003528_100 Hb_188063_040--Hb_003528_100 Hb_046825_010 Hb_046825_010 Hb_188063_040--Hb_046825_010 Hb_000160_120 Hb_000160_120 Hb_188063_040--Hb_000160_120 Hb_000363_070 Hb_000363_070 Hb_188063_040--Hb_000363_070 Hb_000268_050 Hb_000268_050 Hb_188063_040--Hb_000268_050 Hb_065774_010 Hb_065774_010 Hb_188063_040--Hb_065774_010 Hb_003528_100--Hb_065774_010 Hb_003528_100--Hb_000160_120 Hb_003528_100--Hb_046825_010 Hb_001437_170 Hb_001437_170 Hb_003528_100--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_003528_100--Hb_096907_010 Hb_154064_010 Hb_154064_010 Hb_003528_100--Hb_154064_010 Hb_046825_010--Hb_154064_010 Hb_180094_010 Hb_180094_010 Hb_046825_010--Hb_180094_010 Hb_127349_020 Hb_127349_020 Hb_046825_010--Hb_127349_020 Hb_046825_010--Hb_065774_010 Hb_000140_040 Hb_000140_040 Hb_046825_010--Hb_000140_040 Hb_000160_120--Hb_001437_170 Hb_000160_120--Hb_096907_010 Hb_000115_030 Hb_000115_030 Hb_000160_120--Hb_000115_030 Hb_000160_120--Hb_065774_010 Hb_002391_340 Hb_002391_340 Hb_000160_120--Hb_002391_340 Hb_045260_010 Hb_045260_010 Hb_000363_070--Hb_045260_010 Hb_000540_080 Hb_000540_080 Hb_000363_070--Hb_000540_080 Hb_003647_070 Hb_003647_070 Hb_000363_070--Hb_003647_070 Hb_002010_040 Hb_002010_040 Hb_000363_070--Hb_002010_040 Hb_000363_070--Hb_000140_040 Hb_000007_290 Hb_000007_290 Hb_000363_070--Hb_000007_290 Hb_002329_050 Hb_002329_050 Hb_000268_050--Hb_002329_050 Hb_011362_010 Hb_011362_010 Hb_000268_050--Hb_011362_010 Hb_000268_050--Hb_003528_100 Hb_000268_050--Hb_000160_120 Hb_000268_050--Hb_001437_170 Hb_000268_050--Hb_096907_010 Hb_065774_010--Hb_002391_340 Hb_007317_030 Hb_007317_030 Hb_065774_010--Hb_007317_030 Hb_001232_070 Hb_001232_070 Hb_065774_010--Hb_001232_070 Hb_065774_010--Hb_001437_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.752735 1.21975 0 0.0577542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0416929 0 0 0 3.45703

CAGE analysis