Hb_001863_470

Information

Type -
Description -
Location Contig1863: 395766-396457
Sequence    

Annotation

kegg
ID rcu:RCOM_1035210
description hypothetical protein
nr
ID XP_012067873.1
description PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15787 PE=4 SV=1
Gene Ontology
ID GO:0005787
description probable signal peptidase complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18381: 395781-396447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_470 0.0 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
2 Hb_008453_050 0.0555908083 - - PREDICTED: peroxidase 64 [Jatropha curcas]
3 Hb_072771_010 0.0601804494 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
4 Hb_002326_010 0.0603926727 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
5 Hb_001345_050 0.0605555594 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
6 Hb_000224_190 0.0606967449 - - zinc finger protein, putative [Ricinus communis]
7 Hb_154038_010 0.061877932 - - cytochrome P450, putative [Ricinus communis]
8 Hb_064445_020 0.0676557634 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
9 Hb_006483_040 0.0707899183 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
10 Hb_001926_080 0.0713814852 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
11 Hb_001593_040 0.0726829507 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_005839_040 0.0757274334 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
13 Hb_002391_010 0.0777700481 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
14 Hb_001472_150 0.078920243 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
15 Hb_000343_080 0.0847415513 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000485_100 0.0920730243 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
17 Hb_185811_010 0.092184225 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_132880_010 0.0934969897 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
19 Hb_012098_120 0.0944199694 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
20 Hb_003025_170 0.0963184206 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_470 Hb_001863_470 Hb_008453_050 Hb_008453_050 Hb_001863_470--Hb_008453_050 Hb_072771_010 Hb_072771_010 Hb_001863_470--Hb_072771_010 Hb_002326_010 Hb_002326_010 Hb_001863_470--Hb_002326_010 Hb_001345_050 Hb_001345_050 Hb_001863_470--Hb_001345_050 Hb_000224_190 Hb_000224_190 Hb_001863_470--Hb_000224_190 Hb_154038_010 Hb_154038_010 Hb_001863_470--Hb_154038_010 Hb_008453_050--Hb_154038_010 Hb_008453_050--Hb_002326_010 Hb_064445_020 Hb_064445_020 Hb_008453_050--Hb_064445_020 Hb_006483_040 Hb_006483_040 Hb_008453_050--Hb_006483_040 Hb_008453_050--Hb_072771_010 Hb_008453_050--Hb_001345_050 Hb_072771_010--Hb_001345_050 Hb_072771_010--Hb_154038_010 Hb_072771_010--Hb_000224_190 Hb_072771_010--Hb_002326_010 Hb_001926_080 Hb_001926_080 Hb_072771_010--Hb_001926_080 Hb_002326_010--Hb_000224_190 Hb_002326_010--Hb_064445_020 Hb_001593_040 Hb_001593_040 Hb_002326_010--Hb_001593_040 Hb_002326_010--Hb_154038_010 Hb_001345_050--Hb_154038_010 Hb_001345_050--Hb_000224_190 Hb_001345_050--Hb_002326_010 Hb_001345_050--Hb_001926_080 Hb_000224_190--Hb_001926_080 Hb_002391_010 Hb_002391_010 Hb_000224_190--Hb_002391_010 Hb_000224_190--Hb_008453_050 Hb_154038_010--Hb_006483_040 Hb_154038_010--Hb_064445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 15.0582 30.0729 0.0463577 0.142545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0841499 0.292597 0 40.7726

CAGE analysis