Hb_003388_070

Information

Type -
Description -
Location Contig3388: 51046-53563
Sequence    

Annotation

kegg
ID tcc:TCM_029566
description Ribosomal protein L32e isoform 1
nr
ID ADR71279.1
description 60S ribosomal protein L32A [Hevea brasiliensis]
swissprot
ID P49211
description 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2
trembl
ID I3NMP3
description 60S ribosomal protein L32A OS=Hevea brasiliensis GN=RPL32B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l32-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35411: 19745-68798 , PASA_asmbl_35414: 52790-53069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003388_070 0.0 - - 60S ribosomal protein L32A [Hevea brasiliensis]
2 Hb_145745_040 0.1871473614 - - Cell wall-associated hydrolase [Medicago truncatula]
3 Hb_005656_130 0.1926138137 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
4 Hb_000331_530 0.2483791468 - - PREDICTED: callose synthase 10 isoform X1 [Jatropha curcas]
5 Hb_000210_200 0.2578928235 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
6 Hb_006054_040 0.2583136221 - - -
7 Hb_004048_030 0.2670695266 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
8 Hb_000086_540 0.2685335789 - - -
9 Hb_126395_010 0.2717490668 - - hypothetical protein VITISV_043980 [Vitis vinifera]
10 Hb_001231_010 0.2745763261 - - calcium-binding family protein [Populus trichocarpa]
11 Hb_003371_050 0.274893391 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000085_010 0.2777963405 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000331_050 0.2781459671 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
14 Hb_115031_030 0.2845222197 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
15 Hb_000608_150 0.2921903617 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
16 Hb_000120_630 0.2949614404 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
17 Hb_000603_270 0.3039179068 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
18 Hb_001257_150 0.304020885 - - -
19 Hb_007504_030 0.3044748251 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
20 Hb_000087_040 0.3061959914 - - Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_003388_070 Hb_003388_070 Hb_145745_040 Hb_145745_040 Hb_003388_070--Hb_145745_040 Hb_005656_130 Hb_005656_130 Hb_003388_070--Hb_005656_130 Hb_000331_530 Hb_000331_530 Hb_003388_070--Hb_000331_530 Hb_000210_200 Hb_000210_200 Hb_003388_070--Hb_000210_200 Hb_006054_040 Hb_006054_040 Hb_003388_070--Hb_006054_040 Hb_004048_030 Hb_004048_030 Hb_003388_070--Hb_004048_030 Hb_000608_150 Hb_000608_150 Hb_145745_040--Hb_000608_150 Hb_003371_050 Hb_003371_050 Hb_145745_040--Hb_003371_050 Hb_000331_050 Hb_000331_050 Hb_145745_040--Hb_000331_050 Hb_000120_630 Hb_000120_630 Hb_145745_040--Hb_000120_630 Hb_000085_010 Hb_000085_010 Hb_145745_040--Hb_000085_010 Hb_001231_010 Hb_001231_010 Hb_005656_130--Hb_001231_010 Hb_005656_130--Hb_003371_050 Hb_010171_010 Hb_010171_010 Hb_005656_130--Hb_010171_010 Hb_000086_540 Hb_000086_540 Hb_005656_130--Hb_000086_540 Hb_166230_010 Hb_166230_010 Hb_005656_130--Hb_166230_010 Hb_001777_030 Hb_001777_030 Hb_000331_530--Hb_001777_030 Hb_000538_250 Hb_000538_250 Hb_000331_530--Hb_000538_250 Hb_006106_010 Hb_006106_010 Hb_000331_530--Hb_006106_010 Hb_000429_240 Hb_000429_240 Hb_000331_530--Hb_000429_240 Hb_000331_530--Hb_000086_540 Hb_006188_020 Hb_006188_020 Hb_000331_530--Hb_006188_020 Hb_000974_040 Hb_000974_040 Hb_000210_200--Hb_000974_040 Hb_007479_010 Hb_007479_010 Hb_000210_200--Hb_007479_010 Hb_028227_060 Hb_028227_060 Hb_000210_200--Hb_028227_060 Hb_000028_150 Hb_000028_150 Hb_000210_200--Hb_000028_150 Hb_165330_010 Hb_165330_010 Hb_000210_200--Hb_165330_010 Hb_059567_010 Hb_059567_010 Hb_000210_200--Hb_059567_010 Hb_006054_040--Hb_000085_010 Hb_000186_310 Hb_000186_310 Hb_006054_040--Hb_000186_310 Hb_006054_040--Hb_145745_040 Hb_088080_020 Hb_088080_020 Hb_006054_040--Hb_088080_020 Hb_115823_010 Hb_115823_010 Hb_006054_040--Hb_115823_010 Hb_069512_010 Hb_069512_010 Hb_004048_030--Hb_069512_010 Hb_002043_100 Hb_002043_100 Hb_004048_030--Hb_002043_100 Hb_001421_040 Hb_001421_040 Hb_004048_030--Hb_001421_040 Hb_004048_030--Hb_166230_010 Hb_007504_030 Hb_007504_030 Hb_004048_030--Hb_007504_030 Hb_004048_030--Hb_001231_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0409058 0.850797 0.188233 0 0.392356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.427667

CAGE analysis