Hb_166230_010

Information

Type -
Description -
Location Contig166230: 50-1063
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0016491
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166230_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_002243_020 0.1419210301 - - PREDICTED: uncharacterized protein LOC105642097 isoform X1 [Jatropha curcas]
3 Hb_002093_020 0.1529762705 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
4 Hb_001751_050 0.1574097718 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
5 Hb_117807_020 0.1586010387 - - methyltransferase, putative [Ricinus communis]
6 Hb_010407_090 0.1622553422 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
7 Hb_000002_140 0.1629527069 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
8 Hb_000008_160 0.163871725 - - carboxy-lyase, putative [Ricinus communis]
9 Hb_000007_270 0.164246578 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000083_180 0.1653166839 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_007237_100 0.1656623418 - - DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
12 Hb_107373_010 0.1665004163 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
13 Hb_000450_050 0.16698259 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
14 Hb_000047_100 0.1673198787 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
15 Hb_116102_010 0.1675099821 - - hypothetical protein POPTR_0204s00240g [Populus trichocarpa]
16 Hb_005527_070 0.1680995234 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
17 Hb_002609_140 0.1688336869 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000676_320 0.1688397327 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
19 Hb_006665_020 0.1717330945 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
20 Hb_005276_080 0.1723942001 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_166230_010 Hb_166230_010 Hb_002243_020 Hb_002243_020 Hb_166230_010--Hb_002243_020 Hb_002093_020 Hb_002093_020 Hb_166230_010--Hb_002093_020 Hb_001751_050 Hb_001751_050 Hb_166230_010--Hb_001751_050 Hb_117807_020 Hb_117807_020 Hb_166230_010--Hb_117807_020 Hb_010407_090 Hb_010407_090 Hb_166230_010--Hb_010407_090 Hb_000002_140 Hb_000002_140 Hb_166230_010--Hb_000002_140 Hb_000866_060 Hb_000866_060 Hb_002243_020--Hb_000866_060 Hb_004920_020 Hb_004920_020 Hb_002243_020--Hb_004920_020 Hb_000239_050 Hb_000239_050 Hb_002243_020--Hb_000239_050 Hb_127263_010 Hb_127263_010 Hb_002243_020--Hb_127263_010 Hb_012807_030 Hb_012807_030 Hb_002243_020--Hb_012807_030 Hb_000300_110 Hb_000300_110 Hb_002243_020--Hb_000300_110 Hb_002093_020--Hb_001751_050 Hb_000008_160 Hb_000008_160 Hb_002093_020--Hb_000008_160 Hb_087599_010 Hb_087599_010 Hb_002093_020--Hb_087599_010 Hb_001766_160 Hb_001766_160 Hb_002093_020--Hb_001766_160 Hb_000531_100 Hb_000531_100 Hb_002093_020--Hb_000531_100 Hb_005276_080 Hb_005276_080 Hb_002093_020--Hb_005276_080 Hb_001751_050--Hb_000531_100 Hb_013726_060 Hb_013726_060 Hb_001751_050--Hb_013726_060 Hb_001751_050--Hb_005276_080 Hb_001751_050--Hb_001766_160 Hb_001751_050--Hb_000008_160 Hb_000083_180 Hb_000083_180 Hb_117807_020--Hb_000083_180 Hb_117807_020--Hb_005276_080 Hb_117807_020--Hb_001766_160 Hb_000450_050 Hb_000450_050 Hb_117807_020--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_117807_020--Hb_000589_340 Hb_000230_420 Hb_000230_420 Hb_117807_020--Hb_000230_420 Hb_107647_010 Hb_107647_010 Hb_010407_090--Hb_107647_010 Hb_002249_090 Hb_002249_090 Hb_010407_090--Hb_002249_090 Hb_002609_140 Hb_002609_140 Hb_010407_090--Hb_002609_140 Hb_002006_050 Hb_002006_050 Hb_010407_090--Hb_002006_050 Hb_000174_080 Hb_000174_080 Hb_010407_090--Hb_000174_080 Hb_000261_470 Hb_000261_470 Hb_010407_090--Hb_000261_470 Hb_002162_020 Hb_002162_020 Hb_000002_140--Hb_002162_020 Hb_001089_010 Hb_001089_010 Hb_000002_140--Hb_001089_010 Hb_000002_140--Hb_012807_030 Hb_140249_020 Hb_140249_020 Hb_000002_140--Hb_140249_020 Hb_000002_140--Hb_000008_160 Hb_000007_270 Hb_000007_270 Hb_000002_140--Hb_000007_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0362494 0.760879 0.12916 0 0.0956924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0472453 1.2033

CAGE analysis