Hb_002006_050

Information

Type -
Description -
Location Contig2006: 30049-31928
Sequence    

Annotation

kegg
ID rcu:RCOM_1618250
description actin binding protein, putative
nr
ID XP_002511986.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID B9RE46
description Actin binding protein, putative OS=Ricinus communis GN=RCOM_1618250 PE=4 SV=1
Gene Ontology
ID GO:0009657
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20333: 30023-30402 , PASA_asmbl_20335: 31417-31663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_050 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_000261_390 0.1094549915 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
3 Hb_000805_080 0.1104376397 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
4 Hb_000010_380 0.1112845382 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
5 Hb_032631_060 0.1129939063 - - Myosin heavy chain, putative [Ricinus communis]
6 Hb_185830_050 0.1151703248 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
7 Hb_003053_080 0.1190711804 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008566_060 0.1202298022 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001135_170 0.1206143997 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
10 Hb_003337_080 0.1219003701 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
11 Hb_001046_060 0.1226088765 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
12 Hb_003436_040 0.1228508394 - - monovalent cation:proton antiporter, putative [Ricinus communis]
13 Hb_027403_010 0.1232954825 - - P66 protein [Hevea brasiliensis]
14 Hb_001104_080 0.123481732 - - peroxiredoxin, putative [Ricinus communis]
15 Hb_001488_320 0.123753529 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
16 Hb_000640_090 0.1249401151 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
17 Hb_002893_200 0.1249827161 - - aldehyde dehydrogenase, putative [Ricinus communis]
18 Hb_005399_040 0.1250686892 - - RNA polymerase beta subunit [Hevea brasiliensis]
19 Hb_107748_010 0.1250795588 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
20 Hb_001038_020 0.1255267037 - - hypothetical protein JCGZ_19971 [Jatropha curcas]

Gene co-expression network

sample Hb_002006_050 Hb_002006_050 Hb_000261_390 Hb_000261_390 Hb_002006_050--Hb_000261_390 Hb_000805_080 Hb_000805_080 Hb_002006_050--Hb_000805_080 Hb_000010_380 Hb_000010_380 Hb_002006_050--Hb_000010_380 Hb_032631_060 Hb_032631_060 Hb_002006_050--Hb_032631_060 Hb_185830_050 Hb_185830_050 Hb_002006_050--Hb_185830_050 Hb_003053_080 Hb_003053_080 Hb_002006_050--Hb_003053_080 Hb_001135_170 Hb_001135_170 Hb_000261_390--Hb_001135_170 Hb_001832_180 Hb_001832_180 Hb_000261_390--Hb_001832_180 Hb_011344_030 Hb_011344_030 Hb_000261_390--Hb_011344_030 Hb_023344_040 Hb_023344_040 Hb_000261_390--Hb_023344_040 Hb_004631_020 Hb_004631_020 Hb_000261_390--Hb_004631_020 Hb_001287_070 Hb_001287_070 Hb_000261_390--Hb_001287_070 Hb_000805_080--Hb_000010_380 Hb_001046_060 Hb_001046_060 Hb_000805_080--Hb_001046_060 Hb_003337_080 Hb_003337_080 Hb_000805_080--Hb_003337_080 Hb_011068_010 Hb_011068_010 Hb_000805_080--Hb_011068_010 Hb_005605_020 Hb_005605_020 Hb_000805_080--Hb_005605_020 Hb_000805_080--Hb_001287_070 Hb_000010_380--Hb_001046_060 Hb_000010_380--Hb_001287_070 Hb_000010_380--Hb_032631_060 Hb_000010_380--Hb_011068_010 Hb_000010_380--Hb_003337_080 Hb_001104_080 Hb_001104_080 Hb_032631_060--Hb_001104_080 Hb_004116_030 Hb_004116_030 Hb_032631_060--Hb_004116_030 Hb_032631_060--Hb_000805_080 Hb_000923_030 Hb_000923_030 Hb_032631_060--Hb_000923_030 Hb_003653_030 Hb_003653_030 Hb_032631_060--Hb_003653_030 Hb_008566_060 Hb_008566_060 Hb_185830_050--Hb_008566_060 Hb_001279_380 Hb_001279_380 Hb_185830_050--Hb_001279_380 Hb_027403_010 Hb_027403_010 Hb_185830_050--Hb_027403_010 Hb_000139_010 Hb_000139_010 Hb_185830_050--Hb_000139_010 Hb_000640_090 Hb_000640_090 Hb_185830_050--Hb_000640_090 Hb_002893_200 Hb_002893_200 Hb_185830_050--Hb_002893_200 Hb_007044_020 Hb_007044_020 Hb_003053_080--Hb_007044_020 Hb_003053_080--Hb_032631_060 Hb_003053_080--Hb_000923_030 Hb_003053_080--Hb_001135_170 Hb_003053_080--Hb_011344_030 Hb_003053_080--Hb_001104_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126244 0.0499484 3.95238 0.451786 0 0.0377463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0312051 0.171849 0.0461255 0.00979924 10.6831

CAGE analysis