Hb_002609_140

Information

Type -
Description -
Location Contig2609: 111842-118292
Sequence    

Annotation

kegg
ID rcu:RCOM_0611530
description Sodium-dependent phosphate transport protein, putative
nr
ID XP_012067927.1
description PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID O82390
description Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1
trembl
ID A0A067LDF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08493 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sodium-dependent phosphate transport protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27195: 111945-112132 , PASA_asmbl_27196: 112341-118184 , PASA_asmbl_27197: 115313-117447 , PASA_asmbl_27198: 112225-118289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_140 0.0 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_005977_040 0.0704654655 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
3 Hb_000544_070 0.0839519575 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
4 Hb_002249_090 0.0876416054 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
5 Hb_004306_090 0.0876817986 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
6 Hb_107647_010 0.088264581 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
7 Hb_117807_020 0.0936080369 - - methyltransferase, putative [Ricinus communis]
8 Hb_107373_010 0.0979395677 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
9 Hb_002871_180 0.0999166319 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
10 Hb_001766_160 0.1068268134 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
11 Hb_005649_060 0.1069747439 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
12 Hb_005523_040 0.1101445171 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
13 Hb_007477_060 0.1124823783 - - unknown [Medicago truncatula]
14 Hb_005210_010 0.1135731633 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
15 Hb_005433_020 0.1163313283 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
16 Hb_010407_090 0.1167537066 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
17 Hb_000174_080 0.1189081426 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
18 Hb_002485_050 0.1189535152 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
19 Hb_005527_070 0.1191799894 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
20 Hb_000161_010 0.1209107133 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002609_140 Hb_002609_140 Hb_005977_040 Hb_005977_040 Hb_002609_140--Hb_005977_040 Hb_000544_070 Hb_000544_070 Hb_002609_140--Hb_000544_070 Hb_002249_090 Hb_002249_090 Hb_002609_140--Hb_002249_090 Hb_004306_090 Hb_004306_090 Hb_002609_140--Hb_004306_090 Hb_107647_010 Hb_107647_010 Hb_002609_140--Hb_107647_010 Hb_117807_020 Hb_117807_020 Hb_002609_140--Hb_117807_020 Hb_074548_010 Hb_074548_010 Hb_005977_040--Hb_074548_010 Hb_005977_040--Hb_000544_070 Hb_000161_010 Hb_000161_010 Hb_005977_040--Hb_000161_010 Hb_005523_040 Hb_005523_040 Hb_005977_040--Hb_005523_040 Hb_001257_110 Hb_001257_110 Hb_005977_040--Hb_001257_110 Hb_000544_070--Hb_004306_090 Hb_002485_050 Hb_002485_050 Hb_000544_070--Hb_002485_050 Hb_007803_040 Hb_007803_040 Hb_000544_070--Hb_007803_040 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_000544_070--Hb_074548_010 Hb_003602_100 Hb_003602_100 Hb_002249_090--Hb_003602_100 Hb_000174_080 Hb_000174_080 Hb_002249_090--Hb_000174_080 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_002249_090--Hb_107647_010 Hb_005211_080 Hb_005211_080 Hb_004306_090--Hb_005211_080 Hb_005329_010 Hb_005329_010 Hb_004306_090--Hb_005329_010 Hb_000460_040 Hb_000460_040 Hb_004306_090--Hb_000460_040 Hb_001006_150 Hb_001006_150 Hb_004306_090--Hb_001006_150 Hb_005433_020 Hb_005433_020 Hb_004306_090--Hb_005433_020 Hb_010407_090 Hb_010407_090 Hb_107647_010--Hb_010407_090 Hb_107647_010--Hb_005977_040 Hb_107373_010 Hb_107373_010 Hb_107647_010--Hb_107373_010 Hb_107647_010--Hb_117807_020 Hb_000083_180 Hb_000083_180 Hb_117807_020--Hb_000083_180 Hb_005276_080 Hb_005276_080 Hb_117807_020--Hb_005276_080 Hb_001766_160 Hb_001766_160 Hb_117807_020--Hb_001766_160 Hb_000450_050 Hb_000450_050 Hb_117807_020--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_117807_020--Hb_000589_340 Hb_000230_420 Hb_000230_420 Hb_117807_020--Hb_000230_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244732 3.09172 27.5281 5.1271 0.310696 0.288361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.293731 0.380692 0.259303 0.663987 43.2257

CAGE analysis