Hb_000161_010

Information

Type -
Description -
Location Contig161: 10541-10982
Sequence    

Annotation

kegg
ID rcu:RCOM_0321060
description Ferredoxin-2, chloroplast precursor, putative
nr
ID XP_002530673.1
description Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9ZTS2
description Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1
trembl
ID B9SXF4
description Ferredoxin-2, chloroplast, putative OS=Ricinus communis GN=RCOM_0321060 PE=4 SV=1
Gene Ontology
ID GO:0051536
description ferredoxin- chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14413: 10543-10650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_010 0.0 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
2 Hb_000077_380 0.0927972502 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
3 Hb_005977_040 0.1008242963 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
4 Hb_000101_330 0.1155424537 - - -
5 Hb_002609_140 0.1209107133 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001584_210 0.1210822618 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
7 Hb_007477_060 0.1216496365 - - unknown [Medicago truncatula]
8 Hb_000545_180 0.1237429454 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
9 Hb_000482_030 0.1242822335 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
10 Hb_006570_030 0.1249153866 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
11 Hb_002871_180 0.1256622648 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
12 Hb_002005_050 0.125753112 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_005210_010 0.1267212026 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
14 Hb_010666_010 0.127917854 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002375_030 0.1280495907 - - F-box family protein [Populus trichocarpa]
16 Hb_002003_130 0.1281719159 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
17 Hb_003536_020 0.1296629822 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
18 Hb_001416_130 0.1299089274 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000261_380 0.1307228884 transcription factor TF Family: ERF hypothetical protein RCOM_1019500 [Ricinus communis]
20 Hb_005063_030 0.1311168983 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000161_010 Hb_000161_010 Hb_000077_380 Hb_000077_380 Hb_000161_010--Hb_000077_380 Hb_005977_040 Hb_005977_040 Hb_000161_010--Hb_005977_040 Hb_000101_330 Hb_000101_330 Hb_000161_010--Hb_000101_330 Hb_002609_140 Hb_002609_140 Hb_000161_010--Hb_002609_140 Hb_001584_210 Hb_001584_210 Hb_000161_010--Hb_001584_210 Hb_007477_060 Hb_007477_060 Hb_000161_010--Hb_007477_060 Hb_005063_030 Hb_005063_030 Hb_000077_380--Hb_005063_030 Hb_000077_380--Hb_000101_330 Hb_006570_030 Hb_006570_030 Hb_000077_380--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_000077_380--Hb_001975_100 Hb_001564_120 Hb_001564_120 Hb_000077_380--Hb_001564_120 Hb_002852_010 Hb_002852_010 Hb_000077_380--Hb_002852_010 Hb_005977_040--Hb_002609_140 Hb_074548_010 Hb_074548_010 Hb_005977_040--Hb_074548_010 Hb_000544_070 Hb_000544_070 Hb_005977_040--Hb_000544_070 Hb_005523_040 Hb_005523_040 Hb_005977_040--Hb_005523_040 Hb_001257_110 Hb_001257_110 Hb_005977_040--Hb_001257_110 Hb_000101_330--Hb_007477_060 Hb_000101_330--Hb_006570_030 Hb_000101_330--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_001699_140 Hb_001699_140 Hb_000101_330--Hb_001699_140 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060 Hb_002609_140--Hb_000544_070 Hb_002249_090 Hb_002249_090 Hb_002609_140--Hb_002249_090 Hb_004306_090 Hb_004306_090 Hb_002609_140--Hb_004306_090 Hb_107647_010 Hb_107647_010 Hb_002609_140--Hb_107647_010 Hb_117807_020 Hb_117807_020 Hb_002609_140--Hb_117807_020 Hb_011344_030 Hb_011344_030 Hb_001584_210--Hb_011344_030 Hb_002003_130 Hb_002003_130 Hb_001584_210--Hb_002003_130 Hb_002333_040 Hb_002333_040 Hb_001584_210--Hb_002333_040 Hb_007044_270 Hb_007044_270 Hb_001584_210--Hb_007044_270 Hb_001517_010 Hb_001517_010 Hb_001584_210--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_001584_210--Hb_001195_290 Hb_002871_180 Hb_002871_180 Hb_007477_060--Hb_002871_180 Hb_007477_060--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_007477_060--Hb_001766_160 Hb_003536_020 Hb_003536_020 Hb_007477_060--Hb_003536_020 Hb_001322_120 Hb_001322_120 Hb_007477_060--Hb_001322_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.492427 2.52778 16.5438 6.1092 0.572973 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.497035 0.464568 34.9375

CAGE analysis