Hb_007044_270

Information

Type -
Description -
Location Contig7044: 230597-233835
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13870g
description hypothetical protein
nr
ID XP_012077945.1
description PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12966 PE=4 SV=1
Gene Ontology
ID GO:0016021
description rhomboid-related intramembrane serine protease family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55047: 231689-233607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_270 0.0 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
2 Hb_000320_370 0.0686791463 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
3 Hb_002809_030 0.0759867292 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001958_060 0.0784323114 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
5 Hb_117807_020 0.0804969434 - - methyltransferase, putative [Ricinus communis]
6 Hb_000230_420 0.0805285906 - - GS [Hevea brasiliensis subsp. brasiliensis]
7 Hb_001277_350 0.0805821887 - - early light-induced protein, putative [Ricinus communis]
8 Hb_003020_120 0.081916891 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
9 Hb_000077_380 0.0819670759 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
10 Hb_000352_230 0.0833283698 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000545_180 0.083680484 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
12 Hb_000083_180 0.0847794194 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
13 Hb_000589_340 0.0848699621 - - unknown [Populus trichocarpa x Populus deltoides]
14 Hb_003632_020 0.0864280322 - - calcium-binding family protein [Populus trichocarpa]
15 Hb_001292_030 0.0864793522 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
16 Hb_003847_070 0.0865604251 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
17 Hb_001564_120 0.0872461107 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
18 Hb_002003_130 0.0885017345 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
19 Hb_000098_040 0.0888504858 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
20 Hb_001416_130 0.0888801953 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007044_270 Hb_007044_270 Hb_000320_370 Hb_000320_370 Hb_007044_270--Hb_000320_370 Hb_002809_030 Hb_002809_030 Hb_007044_270--Hb_002809_030 Hb_001958_060 Hb_001958_060 Hb_007044_270--Hb_001958_060 Hb_117807_020 Hb_117807_020 Hb_007044_270--Hb_117807_020 Hb_000230_420 Hb_000230_420 Hb_007044_270--Hb_000230_420 Hb_001277_350 Hb_001277_350 Hb_007044_270--Hb_001277_350 Hb_000320_370--Hb_002809_030 Hb_002785_040 Hb_002785_040 Hb_000320_370--Hb_002785_040 Hb_086022_020 Hb_086022_020 Hb_000320_370--Hb_086022_020 Hb_000352_230 Hb_000352_230 Hb_000320_370--Hb_000352_230 Hb_008748_050 Hb_008748_050 Hb_000320_370--Hb_008748_050 Hb_000589_340 Hb_000589_340 Hb_000320_370--Hb_000589_340 Hb_002809_030--Hb_000352_230 Hb_000307_100 Hb_000307_100 Hb_002809_030--Hb_000307_100 Hb_000098_040 Hb_000098_040 Hb_002809_030--Hb_000098_040 Hb_001348_160 Hb_001348_160 Hb_002809_030--Hb_001348_160 Hb_001191_060 Hb_001191_060 Hb_002809_030--Hb_001191_060 Hb_001292_030 Hb_001292_030 Hb_001958_060--Hb_001292_030 Hb_001958_060--Hb_001277_350 Hb_001975_100 Hb_001975_100 Hb_001958_060--Hb_001975_100 Hb_005063_030 Hb_005063_030 Hb_001958_060--Hb_005063_030 Hb_006570_030 Hb_006570_030 Hb_001958_060--Hb_006570_030 Hb_001958_060--Hb_000230_420 Hb_000083_180 Hb_000083_180 Hb_117807_020--Hb_000083_180 Hb_005276_080 Hb_005276_080 Hb_117807_020--Hb_005276_080 Hb_001766_160 Hb_001766_160 Hb_117807_020--Hb_001766_160 Hb_000450_050 Hb_000450_050 Hb_117807_020--Hb_000450_050 Hb_117807_020--Hb_000589_340 Hb_117807_020--Hb_000230_420 Hb_000230_420--Hb_001292_030 Hb_000531_100 Hb_000531_100 Hb_000230_420--Hb_000531_100 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_000230_420--Hb_000083_180 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060 Hb_001277_350--Hb_002534_020 Hb_000497_050 Hb_000497_050 Hb_001277_350--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_001277_350--Hb_002752_020 Hb_146255_030 Hb_146255_030 Hb_001277_350--Hb_146255_030 Hb_001277_350--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108191 1.32236 16.7693 7.48004 0.0194168 0.331578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110153 0.121342 0.0328908 0.0758453 36.3274

CAGE analysis