Hb_165330_010

Information

Type -
Description -
Location Contig165330: 4741-4926
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G067400g
description hypothetical protein
nr
ID CDY63596.1
description BnaUnng00840D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078G5I4
description BnaA04g06320D protein OS=Brassica napus GN=BnaC09g30120D PE=4 SV=1
Gene Ontology
ID GO:0005739
description BnaUnng00840D

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165330_010 0.0 - - BnaUnng00840D [Brassica napus]
2 Hb_003077_010 0.1186426754 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_028872_130 0.1300150979 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
4 Hb_062773_010 0.1363030673 - - beta glucosidase [Manihot esculenta]
5 Hb_000574_380 0.1375686892 - - hydrolase, putative [Ricinus communis]
6 Hb_002121_030 0.1382692343 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
7 Hb_000431_080 0.1418946039 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
8 Hb_005365_040 0.1505245473 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
9 Hb_000347_170 0.1505305548 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_000264_160 0.1526279524 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
11 Hb_000152_650 0.1538494 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_001123_340 0.1561785898 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
13 Hb_001369_590 0.1569964167 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
14 Hb_000187_100 0.1592243185 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
15 Hb_000809_220 0.1630231895 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
16 Hb_000051_150 0.1637577996 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
17 Hb_000494_010 0.164637251 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
18 Hb_054615_010 0.1646693074 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
19 Hb_004223_120 0.1655776809 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
20 Hb_089736_010 0.1657654418 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]

Gene co-expression network

sample Hb_165330_010 Hb_165330_010 Hb_003077_010 Hb_003077_010 Hb_165330_010--Hb_003077_010 Hb_028872_130 Hb_028872_130 Hb_165330_010--Hb_028872_130 Hb_062773_010 Hb_062773_010 Hb_165330_010--Hb_062773_010 Hb_000574_380 Hb_000574_380 Hb_165330_010--Hb_000574_380 Hb_002121_030 Hb_002121_030 Hb_165330_010--Hb_002121_030 Hb_000431_080 Hb_000431_080 Hb_165330_010--Hb_000431_080 Hb_001606_040 Hb_001606_040 Hb_003077_010--Hb_001606_040 Hb_001123_340 Hb_001123_340 Hb_003077_010--Hb_001123_340 Hb_104014_010 Hb_104014_010 Hb_003077_010--Hb_104014_010 Hb_089736_010 Hb_089736_010 Hb_003077_010--Hb_089736_010 Hb_001218_060 Hb_001218_060 Hb_003077_010--Hb_001218_060 Hb_003077_010--Hb_002121_030 Hb_001153_230 Hb_001153_230 Hb_028872_130--Hb_001153_230 Hb_000816_080 Hb_000816_080 Hb_028872_130--Hb_000816_080 Hb_052530_010 Hb_052530_010 Hb_028872_130--Hb_052530_010 Hb_000436_110 Hb_000436_110 Hb_028872_130--Hb_000436_110 Hb_003226_040 Hb_003226_040 Hb_028872_130--Hb_003226_040 Hb_062773_010--Hb_002121_030 Hb_000160_260 Hb_000160_260 Hb_062773_010--Hb_000160_260 Hb_001369_590 Hb_001369_590 Hb_062773_010--Hb_001369_590 Hb_005365_040 Hb_005365_040 Hb_062773_010--Hb_005365_040 Hb_001671_070 Hb_001671_070 Hb_062773_010--Hb_001671_070 Hb_105148_020 Hb_105148_020 Hb_062773_010--Hb_105148_020 Hb_004223_120 Hb_004223_120 Hb_000574_380--Hb_004223_120 Hb_000347_170 Hb_000347_170 Hb_000574_380--Hb_000347_170 Hb_030565_020 Hb_030565_020 Hb_000574_380--Hb_030565_020 Hb_000264_160 Hb_000264_160 Hb_000574_380--Hb_000264_160 Hb_000574_380--Hb_000431_080 Hb_001401_050 Hb_001401_050 Hb_000574_380--Hb_001401_050 Hb_002121_030--Hb_001369_590 Hb_000051_150 Hb_000051_150 Hb_002121_030--Hb_000051_150 Hb_000809_220 Hb_000809_220 Hb_002121_030--Hb_000809_220 Hb_000152_650 Hb_000152_650 Hb_002121_030--Hb_000152_650 Hb_054615_010 Hb_054615_010 Hb_002121_030--Hb_054615_010 Hb_002121_030--Hb_005365_040 Hb_000187_100 Hb_000187_100 Hb_000431_080--Hb_000187_100 Hb_000431_080--Hb_005365_040 Hb_000431_080--Hb_000264_160 Hb_000431_080--Hb_001123_340 Hb_000431_080--Hb_004223_120 Hb_000431_080--Hb_001369_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
347.228 529.107 13398.4 1928.29 50.8109 425.024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.70453 3083.01

CAGE analysis