Hb_028872_130

Information

Type -
Description -
Location Contig28872: 92044-93988
Sequence    

Annotation

kegg
ID rcu:RCOM_1081720
description hypothetical protein
nr
ID XP_012085617.1
description PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067JSB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17915 PE=4 SV=1
Gene Ontology
ID GO:0005634
description remorin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30122: 93001-93950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_130 0.0 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
2 Hb_165330_010 0.1300150979 - - BnaUnng00840D [Brassica napus]
3 Hb_001153_230 0.1419419358 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
4 Hb_000816_080 0.142830055 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
5 Hb_052530_010 0.1461079886 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
6 Hb_000436_110 0.1488946742 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
7 Hb_003226_040 0.150808379 - - PREDICTED: endoglucanase 17 [Populus euphratica]
8 Hb_000120_260 0.1510251326 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
9 Hb_000445_320 0.1555025059 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
10 Hb_001926_010 0.1559836876 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
11 Hb_001699_090 0.1572623665 - - conserved hypothetical protein [Ricinus communis]
12 Hb_088118_010 0.1584378706 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
13 Hb_008165_010 0.1591584498 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
14 Hb_010737_030 0.1618190794 - - unnamed protein product [Vitis vinifera]
15 Hb_000193_170 0.1622001829 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
16 Hb_018663_010 0.1623196015 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
17 Hb_000187_020 0.1625210576 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
18 Hb_000243_180 0.1636680229 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
19 Hb_000051_130 0.1647703507 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_023344_100 0.1657431746 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_028872_130 Hb_028872_130 Hb_165330_010 Hb_165330_010 Hb_028872_130--Hb_165330_010 Hb_001153_230 Hb_001153_230 Hb_028872_130--Hb_001153_230 Hb_000816_080 Hb_000816_080 Hb_028872_130--Hb_000816_080 Hb_052530_010 Hb_052530_010 Hb_028872_130--Hb_052530_010 Hb_000436_110 Hb_000436_110 Hb_028872_130--Hb_000436_110 Hb_003226_040 Hb_003226_040 Hb_028872_130--Hb_003226_040 Hb_003077_010 Hb_003077_010 Hb_165330_010--Hb_003077_010 Hb_062773_010 Hb_062773_010 Hb_165330_010--Hb_062773_010 Hb_000574_380 Hb_000574_380 Hb_165330_010--Hb_000574_380 Hb_002121_030 Hb_002121_030 Hb_165330_010--Hb_002121_030 Hb_000431_080 Hb_000431_080 Hb_165330_010--Hb_000431_080 Hb_074660_010 Hb_074660_010 Hb_001153_230--Hb_074660_010 Hb_000527_030 Hb_000527_030 Hb_001153_230--Hb_000527_030 Hb_007681_020 Hb_007681_020 Hb_001153_230--Hb_007681_020 Hb_028187_010 Hb_028187_010 Hb_001153_230--Hb_028187_010 Hb_001153_230--Hb_000816_080 Hb_001153_230--Hb_052530_010 Hb_088118_010 Hb_088118_010 Hb_000816_080--Hb_088118_010 Hb_000816_080--Hb_052530_010 Hb_002079_100 Hb_002079_100 Hb_000816_080--Hb_002079_100 Hb_000816_080--Hb_003226_040 Hb_004007_080 Hb_004007_080 Hb_000816_080--Hb_004007_080 Hb_007558_060 Hb_007558_060 Hb_000816_080--Hb_007558_060 Hb_002453_040 Hb_002453_040 Hb_052530_010--Hb_002453_040 Hb_052530_010--Hb_003226_040 Hb_000445_320 Hb_000445_320 Hb_052530_010--Hb_000445_320 Hb_000193_170 Hb_000193_170 Hb_052530_010--Hb_000193_170 Hb_003464_040 Hb_003464_040 Hb_052530_010--Hb_003464_040 Hb_008165_010 Hb_008165_010 Hb_000436_110--Hb_008165_010 Hb_010737_030 Hb_010737_030 Hb_000436_110--Hb_010737_030 Hb_102900_010 Hb_102900_010 Hb_000436_110--Hb_102900_010 Hb_018663_010 Hb_018663_010 Hb_000436_110--Hb_018663_010 Hb_000751_010 Hb_000751_010 Hb_000436_110--Hb_000751_010 Hb_000436_110--Hb_003226_040 Hb_002045_020 Hb_002045_020 Hb_003226_040--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_003226_040--Hb_000023_030 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003226_040--Hb_003464_040 Hb_004117_060 Hb_004117_060 Hb_003226_040--Hb_004117_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0198799 0.0529797 3.62775 0.610752 0 0.167137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.44158

CAGE analysis