Hb_000574_380

Information

Type -
Description -
Location Contig574: 335196-338689
Sequence    

Annotation

kegg
ID rcu:RCOM_0901400
description hydrolase, putative (EC:3.8.1.5)
nr
ID XP_002517672.1
description hydrolase, putative [Ricinus communis]
swissprot
ID P9WMS1
description Haloalkane dehalogenase 2 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=dhmA2 PE=1 SV=1
trembl
ID B9RVA3
description Hydrolase, putative OS=Ricinus communis GN=RCOM_0901400 PE=4 SV=1
Gene Ontology
ID GO:0009570
description alpha beta-hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49569: 335092-338538 , PASA_asmbl_49571: 339116-341738 , PASA_asmbl_49572: 339116-341738 , PASA_asmbl_49573: 339116-341738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_380 0.0 - - hydrolase, putative [Ricinus communis]
2 Hb_004223_120 0.1162820198 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
3 Hb_000347_170 0.1166648209 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
4 Hb_030565_020 0.1202475026 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
5 Hb_000264_160 0.1228220926 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
6 Hb_000431_080 0.1247134766 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
7 Hb_001401_050 0.1270013392 - - PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]
8 Hb_002259_020 0.130317116 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
9 Hb_002799_120 0.1304733452 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
10 Hb_006649_100 0.1331496555 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_000084_210 0.1332292883 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
12 Hb_002561_040 0.1336309041 - - Photosynthetic electron transfer C [Theobroma cacao]
13 Hb_000187_100 0.1351316724 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
14 Hb_011716_140 0.1374792057 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
15 Hb_165330_010 0.1375686892 - - BnaUnng00840D [Brassica napus]
16 Hb_005375_100 0.1421654633 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
17 Hb_011512_100 0.1425160576 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
18 Hb_004627_050 0.1433681169 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
19 Hb_001123_340 0.1435217303 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
20 Hb_027380_070 0.1468384686 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000574_380 Hb_000574_380 Hb_004223_120 Hb_004223_120 Hb_000574_380--Hb_004223_120 Hb_000347_170 Hb_000347_170 Hb_000574_380--Hb_000347_170 Hb_030565_020 Hb_030565_020 Hb_000574_380--Hb_030565_020 Hb_000264_160 Hb_000264_160 Hb_000574_380--Hb_000264_160 Hb_000431_080 Hb_000431_080 Hb_000574_380--Hb_000431_080 Hb_001401_050 Hb_001401_050 Hb_000574_380--Hb_001401_050 Hb_000187_100 Hb_000187_100 Hb_004223_120--Hb_000187_100 Hb_009293_030 Hb_009293_030 Hb_004223_120--Hb_009293_030 Hb_004223_120--Hb_030565_020 Hb_002259_020 Hb_002259_020 Hb_004223_120--Hb_002259_020 Hb_006649_100 Hb_006649_100 Hb_004223_120--Hb_006649_100 Hb_004223_120--Hb_001401_050 Hb_000347_170--Hb_004223_120 Hb_000347_170--Hb_006649_100 Hb_003411_070 Hb_003411_070 Hb_000347_170--Hb_003411_070 Hb_031862_190 Hb_031862_190 Hb_000347_170--Hb_031862_190 Hb_000347_170--Hb_009293_030 Hb_000347_170--Hb_000187_100 Hb_011716_140 Hb_011716_140 Hb_030565_020--Hb_011716_140 Hb_002253_020 Hb_002253_020 Hb_030565_020--Hb_002253_020 Hb_011512_100 Hb_011512_100 Hb_030565_020--Hb_011512_100 Hb_030565_020--Hb_002259_020 Hb_002078_280 Hb_002078_280 Hb_030565_020--Hb_002078_280 Hb_000152_650 Hb_000152_650 Hb_000264_160--Hb_000152_650 Hb_001123_340 Hb_001123_340 Hb_000264_160--Hb_001123_340 Hb_000264_160--Hb_000431_080 Hb_003077_010 Hb_003077_010 Hb_000264_160--Hb_003077_010 Hb_005365_040 Hb_005365_040 Hb_000264_160--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000264_160--Hb_104014_010 Hb_000431_080--Hb_000187_100 Hb_000431_080--Hb_005365_040 Hb_000431_080--Hb_001123_340 Hb_000431_080--Hb_004223_120 Hb_001369_590 Hb_001369_590 Hb_000431_080--Hb_001369_590 Hb_001401_050--Hb_030565_020 Hb_008032_010 Hb_008032_010 Hb_001401_050--Hb_008032_010 Hb_132840_060 Hb_132840_060 Hb_001401_050--Hb_132840_060 Hb_006355_100 Hb_006355_100 Hb_001401_050--Hb_006355_100 Hb_003729_050 Hb_003729_050 Hb_001401_050--Hb_003729_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08571 5.61283 174.99 14.3654 0.591423 0.971756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.872464 1.09816 0.359658 0.263375 58.3922

CAGE analysis