Hb_000431_080

Information

Type -
Description -
Location Contig431: 113210-118481
Sequence    

Annotation

kegg
ID rcu:RCOM_1677020
description hypothetical protein
nr
ID XP_012070342.1
description PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RBH8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42217: 113069-113215 , PASA_asmbl_42218: 113906-114278 , PASA_asmbl_42219: 114561-118166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_080 0.0 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
2 Hb_000187_100 0.0810327432 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
3 Hb_005365_040 0.0862855127 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
4 Hb_000264_160 0.0881659989 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
5 Hb_001123_340 0.0935998737 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
6 Hb_004223_120 0.0938669145 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
7 Hb_001369_590 0.0982774796 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
8 Hb_031862_190 0.0986857142 - - -
9 Hb_006649_100 0.099284826 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_000152_650 0.1006217285 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_003411_070 0.1012467039 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
12 Hb_000160_260 0.1034884982 - - nutrient reservoir, putative [Ricinus communis]
13 Hb_089736_010 0.1092917695 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
14 Hb_000735_190 0.1097070181 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
15 Hb_002121_030 0.1107973478 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
16 Hb_001926_010 0.1119405446 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
17 Hb_000347_170 0.1119472454 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_000084_210 0.1138919415 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
19 Hb_054615_010 0.1173546236 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
20 Hb_003077_010 0.1188622706 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000431_080 Hb_000431_080 Hb_000187_100 Hb_000187_100 Hb_000431_080--Hb_000187_100 Hb_005365_040 Hb_005365_040 Hb_000431_080--Hb_005365_040 Hb_000264_160 Hb_000264_160 Hb_000431_080--Hb_000264_160 Hb_001123_340 Hb_001123_340 Hb_000431_080--Hb_001123_340 Hb_004223_120 Hb_004223_120 Hb_000431_080--Hb_004223_120 Hb_001369_590 Hb_001369_590 Hb_000431_080--Hb_001369_590 Hb_000187_100--Hb_004223_120 Hb_031862_190 Hb_031862_190 Hb_000187_100--Hb_031862_190 Hb_003411_070 Hb_003411_070 Hb_000187_100--Hb_003411_070 Hb_000187_100--Hb_005365_040 Hb_003702_010 Hb_003702_010 Hb_000187_100--Hb_003702_010 Hb_005365_040--Hb_001369_590 Hb_000051_150 Hb_000051_150 Hb_005365_040--Hb_000051_150 Hb_000160_260 Hb_000160_260 Hb_005365_040--Hb_000160_260 Hb_002121_030 Hb_002121_030 Hb_005365_040--Hb_002121_030 Hb_000084_210 Hb_000084_210 Hb_005365_040--Hb_000084_210 Hb_000152_650 Hb_000152_650 Hb_000264_160--Hb_000152_650 Hb_000264_160--Hb_001123_340 Hb_003077_010 Hb_003077_010 Hb_000264_160--Hb_003077_010 Hb_000264_160--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000264_160--Hb_104014_010 Hb_001218_060 Hb_001218_060 Hb_001123_340--Hb_001218_060 Hb_000282_010 Hb_000282_010 Hb_001123_340--Hb_000282_010 Hb_001926_010 Hb_001926_010 Hb_001123_340--Hb_001926_010 Hb_089736_010 Hb_089736_010 Hb_001123_340--Hb_089736_010 Hb_001123_340--Hb_000187_100 Hb_009293_030 Hb_009293_030 Hb_004223_120--Hb_009293_030 Hb_030565_020 Hb_030565_020 Hb_004223_120--Hb_030565_020 Hb_002259_020 Hb_002259_020 Hb_004223_120--Hb_002259_020 Hb_006649_100 Hb_006649_100 Hb_004223_120--Hb_006649_100 Hb_001401_050 Hb_001401_050 Hb_004223_120--Hb_001401_050 Hb_001369_590--Hb_002121_030 Hb_002499_050 Hb_002499_050 Hb_001369_590--Hb_002499_050 Hb_006620_030 Hb_006620_030 Hb_001369_590--Hb_006620_030 Hb_001369_590--Hb_000152_650 Hb_001369_590--Hb_000084_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00545895 0.249669 9.54996 1.30888 0.0561898 0.00953195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00973577 0.0560012 0.00771667 2.39488

CAGE analysis