Hb_004048_030

Information

Type -
Description -
Location Contig4048: 3566-5606
Sequence    

Annotation

kegg
ID vvi:100241966
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID KJB61627.1
description hypothetical protein B456_009G371200, partial [Gossypium raimondii]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID F6H510
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01960 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40146: 4082-5032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_030 0.0 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
2 Hb_069512_010 0.1835888496 - - -
3 Hb_002043_100 0.1847700522 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001421_040 0.1948365746 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 2 [Jatropha curcas]
5 Hb_166230_010 0.2032712224 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_007504_030 0.2156145587 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
7 Hb_001231_010 0.2283404449 - - calcium-binding family protein [Populus trichocarpa]
8 Hb_005656_130 0.2410906079 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
9 Hb_001907_080 0.245000192 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
10 Hb_007504_040 0.2467721988 - - hypothetical chloroplast RF2 [Fragaria iinumae]
11 Hb_046157_010 0.2469062912 - - PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
12 Hb_051731_010 0.2470841877 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_007317_170 0.2478453147 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
14 Hb_002243_020 0.2487017451 - - PREDICTED: uncharacterized protein LOC105642097 isoform X1 [Jatropha curcas]
15 Hb_000062_480 0.2495334286 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
16 Hb_126933_020 0.2521302189 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
17 Hb_005488_190 0.253852424 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
18 Hb_001728_110 0.2546712876 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
19 Hb_116102_010 0.2560428247 - - hypothetical protein POPTR_0204s00240g [Populus trichocarpa]
20 Hb_005399_050 0.2571744778 - - DNA-directed RNA polymerase subunit beta [Glycine soja]

Gene co-expression network

sample Hb_004048_030 Hb_004048_030 Hb_069512_010 Hb_069512_010 Hb_004048_030--Hb_069512_010 Hb_002043_100 Hb_002043_100 Hb_004048_030--Hb_002043_100 Hb_001421_040 Hb_001421_040 Hb_004048_030--Hb_001421_040 Hb_166230_010 Hb_166230_010 Hb_004048_030--Hb_166230_010 Hb_007504_030 Hb_007504_030 Hb_004048_030--Hb_007504_030 Hb_001231_010 Hb_001231_010 Hb_004048_030--Hb_001231_010 Hb_069512_010--Hb_002043_100 Hb_046157_010 Hb_046157_010 Hb_069512_010--Hb_046157_010 Hb_126933_020 Hb_126933_020 Hb_069512_010--Hb_126933_020 Hb_150651_020 Hb_150651_020 Hb_069512_010--Hb_150651_020 Hb_002498_300 Hb_002498_300 Hb_069512_010--Hb_002498_300 Hb_001907_080 Hb_001907_080 Hb_002043_100--Hb_001907_080 Hb_002043_100--Hb_001421_040 Hb_001377_060 Hb_001377_060 Hb_002043_100--Hb_001377_060 Hb_016687_010 Hb_016687_010 Hb_002043_100--Hb_016687_010 Hb_005488_190 Hb_005488_190 Hb_002043_100--Hb_005488_190 Hb_001421_040--Hb_001377_060 Hb_001728_110 Hb_001728_110 Hb_001421_040--Hb_001728_110 Hb_001421_040--Hb_001907_080 Hb_000007_030 Hb_000007_030 Hb_001421_040--Hb_000007_030 Hb_002835_090 Hb_002835_090 Hb_001421_040--Hb_002835_090 Hb_002243_020 Hb_002243_020 Hb_166230_010--Hb_002243_020 Hb_002093_020 Hb_002093_020 Hb_166230_010--Hb_002093_020 Hb_001751_050 Hb_001751_050 Hb_166230_010--Hb_001751_050 Hb_117807_020 Hb_117807_020 Hb_166230_010--Hb_117807_020 Hb_010407_090 Hb_010407_090 Hb_166230_010--Hb_010407_090 Hb_000002_140 Hb_000002_140 Hb_166230_010--Hb_000002_140 Hb_007317_170 Hb_007317_170 Hb_007504_030--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_007504_030--Hb_000603_270 Hb_003055_030 Hb_003055_030 Hb_007504_030--Hb_003055_030 Hb_004143_030 Hb_004143_030 Hb_007504_030--Hb_004143_030 Hb_071126_010 Hb_071126_010 Hb_007504_030--Hb_071126_010 Hb_004208_090 Hb_004208_090 Hb_007504_030--Hb_004208_090 Hb_000832_270 Hb_000832_270 Hb_001231_010--Hb_000832_270 Hb_000327_260 Hb_000327_260 Hb_001231_010--Hb_000327_260 Hb_000539_040 Hb_000539_040 Hb_001231_010--Hb_000539_040 Hb_001231_010--Hb_001728_110 Hb_007479_010 Hb_007479_010 Hb_001231_010--Hb_007479_010 Hb_137222_010 Hb_137222_010 Hb_001231_010--Hb_137222_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0181935 0.0181839 0.221185 0.0301781 0 0.0895267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0262047 0.270349

CAGE analysis