Hb_003055_030

Information

Type -
Description -
Location Contig3055: 11552-12004
Sequence    

Annotation

kegg
ID rcu:RCOM_1062760
description nucleic acid binding protein, putative
nr
ID XP_012091528.1
description PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_030 0.0 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
2 Hb_007317_170 0.1353936656 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
3 Hb_004208_090 0.1637143441 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
4 Hb_000768_120 0.1640105628 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
5 Hb_000637_070 0.1658842625 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
6 Hb_015026_030 0.1742911913 - - hypothetical protein POPTR_0011s04350g [Populus trichocarpa]
7 Hb_001338_070 0.174612087 - - ORF126 [Jatropha curcas]
8 Hb_001999_260 0.1754834465 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
9 Hb_007504_030 0.1756735178 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
10 Hb_000934_260 0.1767445385 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_006681_020 0.1782977755 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
12 Hb_001386_150 0.1787372937 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_126933_020 0.1827458888 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
14 Hb_185274_030 0.187629791 - - hypothetical protein JCGZ_15170 [Jatropha curcas]
15 Hb_004117_150 0.1892455944 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
16 Hb_004855_070 0.1893939571 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
17 Hb_002107_040 0.19177771 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
18 Hb_007479_010 0.1921460958 - - Root phototropism protein, putative [Ricinus communis]
19 Hb_002498_300 0.1943914882 - - BnaC04g50140D [Brassica napus]
20 Hb_173660_010 0.1948704237 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]

Gene co-expression network

sample Hb_003055_030 Hb_003055_030 Hb_007317_170 Hb_007317_170 Hb_003055_030--Hb_007317_170 Hb_004208_090 Hb_004208_090 Hb_003055_030--Hb_004208_090 Hb_000768_120 Hb_000768_120 Hb_003055_030--Hb_000768_120 Hb_000637_070 Hb_000637_070 Hb_003055_030--Hb_000637_070 Hb_015026_030 Hb_015026_030 Hb_003055_030--Hb_015026_030 Hb_001338_070 Hb_001338_070 Hb_003055_030--Hb_001338_070 Hb_007504_030 Hb_007504_030 Hb_007317_170--Hb_007504_030 Hb_007317_170--Hb_000768_120 Hb_004117_150 Hb_004117_150 Hb_007317_170--Hb_004117_150 Hb_007317_170--Hb_004208_090 Hb_000130_330 Hb_000130_330 Hb_007317_170--Hb_000130_330 Hb_001999_260 Hb_001999_260 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_004208_090--Hb_000768_120 Hb_000768_120--Hb_006681_020 Hb_000768_120--Hb_004855_070 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_002495_090 Hb_002495_090 Hb_000768_120--Hb_002495_090 Hb_000768_120--Hb_001999_260 Hb_000637_070--Hb_000934_260 Hb_000637_070--Hb_001999_260 Hb_000637_070--Hb_004208_090 Hb_001975_050 Hb_001975_050 Hb_000637_070--Hb_001975_050 Hb_050514_020 Hb_050514_020 Hb_000637_070--Hb_050514_020 Hb_003470_100 Hb_003470_100 Hb_000637_070--Hb_003470_100 Hb_015026_030--Hb_000637_070 Hb_015026_030--Hb_001975_050 Hb_015026_030--Hb_007317_170 Hb_000816_210 Hb_000816_210 Hb_015026_030--Hb_000816_210 Hb_001343_120 Hb_001343_120 Hb_015026_030--Hb_001343_120 Hb_180985_010 Hb_180985_010 Hb_001338_070--Hb_180985_010 Hb_000482_160 Hb_000482_160 Hb_001338_070--Hb_000482_160 Hb_002027_100 Hb_002027_100 Hb_001338_070--Hb_002027_100 Hb_001916_110 Hb_001916_110 Hb_001338_070--Hb_001916_110 Hb_185274_030 Hb_185274_030 Hb_001338_070--Hb_185274_030 Hb_005305_140 Hb_005305_140 Hb_001338_070--Hb_005305_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51501 1.12608 9.40996 1.29176 0.784691 0.540872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.314191 7.27737

CAGE analysis