Hb_007317_170

Information

Type -
Description -
Location Contig7317: 110916-112064
Sequence    

Annotation

kegg
ID rcu:RCOM_1281760
description hypothetical protein
nr
ID XP_012076118.1
description PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
swissprot
ID Q6NMR8
description Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana GN=FAF3 PE=2 SV=1
trembl
ID A0A067KDV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12692 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_170 0.0 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
2 Hb_007504_030 0.1211563087 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
3 Hb_003055_030 0.1353936656 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
4 Hb_000768_120 0.1550358112 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
5 Hb_004117_150 0.1735424206 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
6 Hb_004208_090 0.1751067483 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_000130_330 0.1755364149 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
8 Hb_007479_010 0.1780773089 - - Root phototropism protein, putative [Ricinus communis]
9 Hb_015026_030 0.1836128843 - - hypothetical protein POPTR_0011s04350g [Populus trichocarpa]
10 Hb_006681_020 0.1853877799 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
11 Hb_137216_010 0.1893608043 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
12 Hb_000062_480 0.1925414051 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
13 Hb_000603_270 0.1933489371 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
14 Hb_002006_010 0.194424616 - - Adenine nucleotide alpha hydrolases-like superfamily protein, putative isoform 1 [Theobroma cacao]
15 Hb_005488_190 0.1982553112 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_002495_090 0.1991211735 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
17 Hb_004007_170 0.200547894 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_001999_260 0.2013822813 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
19 Hb_103990_010 0.2018043895 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
20 Hb_000186_110 0.2018737857 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]

Gene co-expression network

sample Hb_007317_170 Hb_007317_170 Hb_007504_030 Hb_007504_030 Hb_007317_170--Hb_007504_030 Hb_003055_030 Hb_003055_030 Hb_007317_170--Hb_003055_030 Hb_000768_120 Hb_000768_120 Hb_007317_170--Hb_000768_120 Hb_004117_150 Hb_004117_150 Hb_007317_170--Hb_004117_150 Hb_004208_090 Hb_004208_090 Hb_007317_170--Hb_004208_090 Hb_000130_330 Hb_000130_330 Hb_007317_170--Hb_000130_330 Hb_000603_270 Hb_000603_270 Hb_007504_030--Hb_000603_270 Hb_007504_030--Hb_003055_030 Hb_004143_030 Hb_004143_030 Hb_007504_030--Hb_004143_030 Hb_071126_010 Hb_071126_010 Hb_007504_030--Hb_071126_010 Hb_007504_030--Hb_004208_090 Hb_003055_030--Hb_004208_090 Hb_003055_030--Hb_000768_120 Hb_000637_070 Hb_000637_070 Hb_003055_030--Hb_000637_070 Hb_015026_030 Hb_015026_030 Hb_003055_030--Hb_015026_030 Hb_001338_070 Hb_001338_070 Hb_003055_030--Hb_001338_070 Hb_006681_020 Hb_006681_020 Hb_000768_120--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_000768_120--Hb_004855_070 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_002495_090 Hb_002495_090 Hb_000768_120--Hb_002495_090 Hb_000768_120--Hb_004208_090 Hb_001999_260 Hb_001999_260 Hb_000768_120--Hb_001999_260 Hb_004117_150--Hb_004208_090 Hb_004117_150--Hb_006681_020 Hb_004117_150--Hb_001999_260 Hb_004007_170 Hb_004007_170 Hb_004117_150--Hb_004007_170 Hb_004117_150--Hb_000768_120 Hb_000703_070 Hb_000703_070 Hb_004117_150--Hb_000703_070 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_006681_020 Hb_004208_090--Hb_004855_070 Hb_001300_130 Hb_001300_130 Hb_000130_330--Hb_001300_130 Hb_000130_330--Hb_004117_150 Hb_000062_480 Hb_000062_480 Hb_000130_330--Hb_000062_480 Hb_027298_020 Hb_027298_020 Hb_000130_330--Hb_027298_020 Hb_000130_330--Hb_000703_070 Hb_000802_050 Hb_000802_050 Hb_000130_330--Hb_000802_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.52753 0.790174 48.7312 7.55266 4.66906 5.0009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.284233 0.11178 0 1.21216 39.5568

CAGE analysis