Hb_000062_480

Information

Type -
Description -
Location Contig62: 349078-351348
Sequence    

Annotation

kegg
ID rcu:RCOM_1081170
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_012085635.1
description PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
swissprot
ID Q84P23
description 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2
trembl
ID A0A067K3F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17928 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 4-coumarate-- ligase-like 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51473: 349333-350002 , PASA_asmbl_51474: 350038-350504 , PASA_asmbl_51475: 350516-351407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_480 0.0 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
2 Hb_006681_020 0.0920058885 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
3 Hb_005488_190 0.0974274877 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
4 Hb_000768_120 0.1054624088 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
5 Hb_007803_040 0.1094233984 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
6 Hb_004117_150 0.1125068002 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
7 Hb_004208_090 0.114641497 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
8 Hb_001999_260 0.1195298862 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
9 Hb_002495_090 0.1214846156 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
10 Hb_000703_070 0.1226027962 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
11 Hb_002485_050 0.1271622723 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
12 Hb_006583_030 0.132280772 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
13 Hb_004855_070 0.1328679868 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
14 Hb_027298_020 0.1351400028 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
15 Hb_000130_330 0.1360727141 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
16 Hb_000009_510 0.1367735137 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
17 Hb_002811_250 0.1372134116 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
18 Hb_010557_010 0.1373585903 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
19 Hb_000089_140 0.1414910784 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
20 Hb_000174_080 0.1433896207 - - 4-nitrophenylphosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000062_480 Hb_000062_480 Hb_006681_020 Hb_006681_020 Hb_000062_480--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_000062_480--Hb_005488_190 Hb_000768_120 Hb_000768_120 Hb_000062_480--Hb_000768_120 Hb_007803_040 Hb_007803_040 Hb_000062_480--Hb_007803_040 Hb_004117_150 Hb_004117_150 Hb_000062_480--Hb_004117_150 Hb_004208_090 Hb_004208_090 Hb_000062_480--Hb_004208_090 Hb_006681_020--Hb_000768_120 Hb_001999_260 Hb_001999_260 Hb_006681_020--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006681_020--Hb_004855_070 Hb_006583_030 Hb_006583_030 Hb_006681_020--Hb_006583_030 Hb_006681_020--Hb_004117_150 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_005488_190--Hb_007803_040 Hb_002811_250 Hb_002811_250 Hb_005488_190--Hb_002811_250 Hb_005488_190--Hb_006681_020 Hb_009393_130 Hb_009393_130 Hb_005488_190--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_005488_190--Hb_002495_090 Hb_000768_120--Hb_004855_070 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_000768_120--Hb_002495_090 Hb_000768_120--Hb_004208_090 Hb_000768_120--Hb_001999_260 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_007803_040--Hb_009393_130 Hb_003605_060 Hb_003605_060 Hb_007803_040--Hb_003605_060 Hb_000544_070 Hb_000544_070 Hb_007803_040--Hb_000544_070 Hb_004117_150--Hb_004208_090 Hb_004117_150--Hb_001999_260 Hb_004007_170 Hb_004007_170 Hb_004117_150--Hb_004007_170 Hb_004117_150--Hb_000768_120 Hb_000703_070 Hb_000703_070 Hb_004117_150--Hb_000703_070 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_006681_020 Hb_004208_090--Hb_004855_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269485 0.744534 9.75965 2.04188 0.746742 0.781455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105828 0.249792 0.432401 0.663505 11.0355

CAGE analysis