Hb_004007_170

Information

Type -
Description -
Location Contig4007: 154313-156611
Sequence    

Annotation

kegg
ID rcu:RCOM_0579610
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002525263.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID O65399
description Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3
trembl
ID B9SGZ4
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0579610 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39871: 154282-155681 , PASA_asmbl_39872: 154282-155681 , PASA_asmbl_39873: 155694-156632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_170 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_003470_100 0.0795835176 - - protein binding protein, putative [Ricinus communis]
3 Hb_004117_150 0.0964348427 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
4 Hb_006681_020 0.1020727658 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
5 Hb_000146_030 0.1057276991 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
6 Hb_001047_180 0.1109012441 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004855_070 0.1121464544 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
8 Hb_000703_070 0.1160186964 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
9 Hb_000302_230 0.117048002 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001999_260 0.1187292284 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
11 Hb_001366_350 0.1217777998 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
12 Hb_000768_120 0.1228471281 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
13 Hb_000169_070 0.1230900762 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
14 Hb_006583_030 0.1269929669 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
15 Hb_004208_090 0.127297617 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_000322_040 0.1334693862 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
17 Hb_000009_510 0.1349977747 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
18 Hb_000393_040 0.135574174 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
19 Hb_137216_010 0.1395274202 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
20 Hb_006252_030 0.1409721638 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]

Gene co-expression network

sample Hb_004007_170 Hb_004007_170 Hb_003470_100 Hb_003470_100 Hb_004007_170--Hb_003470_100 Hb_004117_150 Hb_004117_150 Hb_004007_170--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004007_170--Hb_006681_020 Hb_000146_030 Hb_000146_030 Hb_004007_170--Hb_000146_030 Hb_001047_180 Hb_001047_180 Hb_004007_170--Hb_001047_180 Hb_004855_070 Hb_004855_070 Hb_004007_170--Hb_004855_070 Hb_050514_020 Hb_050514_020 Hb_003470_100--Hb_050514_020 Hb_003470_100--Hb_004855_070 Hb_001999_260 Hb_001999_260 Hb_003470_100--Hb_001999_260 Hb_004208_090 Hb_004208_090 Hb_003470_100--Hb_004208_090 Hb_003470_100--Hb_001047_180 Hb_004117_150--Hb_004208_090 Hb_004117_150--Hb_006681_020 Hb_004117_150--Hb_001999_260 Hb_000768_120 Hb_000768_120 Hb_004117_150--Hb_000768_120 Hb_000703_070 Hb_000703_070 Hb_004117_150--Hb_000703_070 Hb_006681_020--Hb_000768_120 Hb_006681_020--Hb_001999_260 Hb_006681_020--Hb_004855_070 Hb_006583_030 Hb_006583_030 Hb_006681_020--Hb_006583_030 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_001047_180--Hb_002411_100 Hb_010557_010 Hb_010557_010 Hb_001047_180--Hb_010557_010 Hb_001047_180--Hb_006583_030 Hb_001047_180--Hb_000703_070 Hb_004855_070--Hb_000768_120 Hb_004855_070--Hb_004208_090 Hb_004855_070--Hb_006583_030 Hb_004855_070--Hb_001999_260 Hb_000134_040 Hb_000134_040 Hb_004855_070--Hb_000134_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63921 1.58156 28.0506 4.86058 1.03353 1.68619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68966 2.149 0.17257 1.26824 19.1926

CAGE analysis