Hb_000130_330

Information

Type transcription factor
Description TF Family: TCP
Location Contig130: 310734-312529
Sequence    

Annotation

kegg
ID rcu:RCOM_1693000
description hypothetical protein
nr
ID XP_012074215.1
description PREDICTED: transcription factor TCP3-like [Jatropha curcas]
swissprot
ID Q8LPR5
description Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1
trembl
ID A0A067KVJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09840 PE=4 SV=1
Gene Ontology
ID GO:0044763
description transcription factor tcp4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08928: 310060-313030
cDNA
(Sanger)
(ID:Location)		 010_O04.ab1: 310419-311163 , 018_F02.ab1: 310419-311208

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_330 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
2 Hb_001300_130 0.1207471422 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
3 Hb_004117_150 0.1326902899 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
4 Hb_000062_480 0.1360727141 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
5 Hb_027298_020 0.1376837798 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
6 Hb_000703_070 0.1407023428 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
7 Hb_000802_050 0.1421518361 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
8 Hb_137216_010 0.1431972979 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
9 Hb_005488_160 0.1464038304 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
10 Hb_000174_080 0.1480045197 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
11 Hb_002071_030 0.1534062914 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
12 Hb_000175_640 0.1542052708 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
13 Hb_006681_020 0.1578188335 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
14 Hb_000768_120 0.160993013 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
15 Hb_000544_080 0.1662402849 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
16 Hb_004208_090 0.1662404394 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
17 Hb_000186_110 0.1665055115 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
18 Hb_011519_050 0.1669610396 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
19 Hb_058620_080 0.1677084953 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
20 Hb_007803_040 0.1682469736 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000130_330 Hb_000130_330 Hb_001300_130 Hb_001300_130 Hb_000130_330--Hb_001300_130 Hb_004117_150 Hb_004117_150 Hb_000130_330--Hb_004117_150 Hb_000062_480 Hb_000062_480 Hb_000130_330--Hb_000062_480 Hb_027298_020 Hb_027298_020 Hb_000130_330--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_000130_330--Hb_000703_070 Hb_000802_050 Hb_000802_050 Hb_000130_330--Hb_000802_050 Hb_001300_130--Hb_000802_050 Hb_001300_130--Hb_027298_020 Hb_001300_130--Hb_000703_070 Hb_003549_140 Hb_003549_140 Hb_001300_130--Hb_003549_140 Hb_000684_430 Hb_000684_430 Hb_001300_130--Hb_000684_430 Hb_005563_040 Hb_005563_040 Hb_001300_130--Hb_005563_040 Hb_004208_090 Hb_004208_090 Hb_004117_150--Hb_004208_090 Hb_006681_020 Hb_006681_020 Hb_004117_150--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_004117_150--Hb_001999_260 Hb_004007_170 Hb_004007_170 Hb_004117_150--Hb_004007_170 Hb_000768_120 Hb_000768_120 Hb_004117_150--Hb_000768_120 Hb_004117_150--Hb_000703_070 Hb_000062_480--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_000062_480--Hb_005488_190 Hb_000062_480--Hb_000768_120 Hb_007803_040 Hb_007803_040 Hb_000062_480--Hb_007803_040 Hb_000062_480--Hb_004117_150 Hb_000062_480--Hb_004208_090 Hb_027298_020--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_027298_020--Hb_000803_170 Hb_010557_010 Hb_010557_010 Hb_027298_020--Hb_010557_010 Hb_002232_380 Hb_002232_380 Hb_027298_020--Hb_002232_380 Hb_002811_310 Hb_002811_310 Hb_027298_020--Hb_002811_310 Hb_000703_070--Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_000703_070--Hb_002411_100 Hb_002811_250 Hb_002811_250 Hb_000703_070--Hb_002811_250 Hb_000703_070--Hb_002232_380 Hb_006829_080 Hb_006829_080 Hb_000802_050--Hb_006829_080 Hb_000802_050--Hb_003549_140 Hb_000802_050--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_000802_050--Hb_000005_130 Hb_000802_050--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28958 0.378257 26.2429 4.08054 2.66747 2.29329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63207 0.848787 1.5187 0.980322 32.4618

CAGE analysis