Hb_015026_030

Information

Type -
Description -
Location Contig15026: 17219-18505
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04350g
description POPTRDRAFT_887319; hypothetical protein
nr
ID XP_002317241.1
description hypothetical protein POPTR_0011s04350g [Populus trichocarpa]
swissprot
ID O64791
description Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1
trembl
ID B9HYZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s04350g PE=3 SV=1
Gene Ontology
ID GO:0016020
description syntaxin 125 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_030 0.0 - - hypothetical protein POPTR_0011s04350g [Populus trichocarpa]
2 Hb_000637_070 0.163059837 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
3 Hb_003055_030 0.1742911913 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
4 Hb_001975_050 0.175313385 - - Tyrosine-specific transport protein, putative [Ricinus communis]
5 Hb_007317_170 0.1836128843 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
6 Hb_000816_210 0.1845623341 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
7 Hb_001343_120 0.1877931278 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002435_090 0.189614585 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
9 Hb_003470_100 0.1915270702 - - protein binding protein, putative [Ricinus communis]
10 Hb_004117_150 0.1938991254 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
11 Hb_004007_170 0.1948629514 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_000169_070 0.1963675218 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
13 Hb_000322_040 0.1964535983 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
14 Hb_000934_260 0.1965163662 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_027654_070 0.1978043549 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006252_030 0.1991768848 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
17 Hb_004208_090 0.2030391161 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
18 Hb_000207_140 0.2039767664 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
19 Hb_000028_150 0.2048783691 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
20 Hb_000768_120 0.2065522723 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]

Gene co-expression network

sample Hb_015026_030 Hb_015026_030 Hb_000637_070 Hb_000637_070 Hb_015026_030--Hb_000637_070 Hb_003055_030 Hb_003055_030 Hb_015026_030--Hb_003055_030 Hb_001975_050 Hb_001975_050 Hb_015026_030--Hb_001975_050 Hb_007317_170 Hb_007317_170 Hb_015026_030--Hb_007317_170 Hb_000816_210 Hb_000816_210 Hb_015026_030--Hb_000816_210 Hb_001343_120 Hb_001343_120 Hb_015026_030--Hb_001343_120 Hb_000934_260 Hb_000934_260 Hb_000637_070--Hb_000934_260 Hb_001999_260 Hb_001999_260 Hb_000637_070--Hb_001999_260 Hb_004208_090 Hb_004208_090 Hb_000637_070--Hb_004208_090 Hb_000637_070--Hb_001975_050 Hb_050514_020 Hb_050514_020 Hb_000637_070--Hb_050514_020 Hb_003470_100 Hb_003470_100 Hb_000637_070--Hb_003470_100 Hb_003055_030--Hb_007317_170 Hb_003055_030--Hb_004208_090 Hb_000768_120 Hb_000768_120 Hb_003055_030--Hb_000768_120 Hb_003055_030--Hb_000637_070 Hb_001338_070 Hb_001338_070 Hb_003055_030--Hb_001338_070 Hb_188739_010 Hb_188739_010 Hb_001975_050--Hb_188739_010 Hb_002435_090 Hb_002435_090 Hb_001975_050--Hb_002435_090 Hb_001975_050--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_001975_050--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_007504_030 Hb_007504_030 Hb_007317_170--Hb_007504_030 Hb_007317_170--Hb_000768_120 Hb_004117_150 Hb_004117_150 Hb_007317_170--Hb_004117_150 Hb_007317_170--Hb_004208_090 Hb_000130_330 Hb_000130_330 Hb_007317_170--Hb_000130_330 Hb_000207_140 Hb_000207_140 Hb_000816_210--Hb_000207_140 Hb_000816_210--Hb_002435_090 Hb_000816_210--Hb_001975_050 Hb_000438_130 Hb_000438_130 Hb_000816_210--Hb_000438_130 Hb_000816_210--Hb_188739_010 Hb_003430_040 Hb_003430_040 Hb_000816_210--Hb_003430_040 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_002435_090 Hb_001343_120--Hb_000207_140 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0975313 0.0397898 0.648633 0.0511253 0.040628 0.0476281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0496254 0 0 0.0313795 0.319773

CAGE analysis