Hb_007504_030

Information

Type -
Description -
Location Contig7504: 22778-23180
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00080
description rpl14; ribosomal protein L14
nr
ID AFU96346.1
description Rpl14, partial (chloroplast) [Schistostemon retusum]
swissprot
ID B1NWI6
description 50S ribosomal protein L14, chloroplastic OS=Manihot esculenta GN=rpl14 PE=3 SV=1
trembl
ID K4KBT0
description 50S ribosomal protein L14, chloroplastic (Fragment) OS=Schistostemon retusum GN=rpl14 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007504_030 0.0 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
2 Hb_007317_170 0.1211563087 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
3 Hb_000603_270 0.1464742001 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
4 Hb_003055_030 0.1756735178 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
5 Hb_004143_030 0.1966015702 - - PREDICTED: chromosome-associated kinesin KIF4B [Jatropha curcas]
6 Hb_071126_010 0.2044603846 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_004208_090 0.2095360565 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
8 Hb_069512_010 0.2117755281 - - -
9 Hb_002400_010 0.2130261927 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
10 Hb_000130_330 0.2136887525 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
11 Hb_004048_030 0.2156145587 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
12 Hb_015026_030 0.2209374816 - - hypothetical protein POPTR_0011s04350g [Populus trichocarpa]
13 Hb_000768_120 0.2212632295 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
14 Hb_000088_150 0.223472151 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
15 Hb_004117_150 0.2271262198 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
16 Hb_000322_040 0.2282596843 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
17 Hb_017043_030 0.2293407611 - - hypothetical protein CISIN_1g011604mg [Citrus sinensis]
18 Hb_103990_010 0.2320704435 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
19 Hb_000934_260 0.2333128041 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_000062_480 0.2335847415 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007504_030 Hb_007504_030 Hb_007317_170 Hb_007317_170 Hb_007504_030--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_007504_030--Hb_000603_270 Hb_003055_030 Hb_003055_030 Hb_007504_030--Hb_003055_030 Hb_004143_030 Hb_004143_030 Hb_007504_030--Hb_004143_030 Hb_071126_010 Hb_071126_010 Hb_007504_030--Hb_071126_010 Hb_004208_090 Hb_004208_090 Hb_007504_030--Hb_004208_090 Hb_007317_170--Hb_003055_030 Hb_000768_120 Hb_000768_120 Hb_007317_170--Hb_000768_120 Hb_004117_150 Hb_004117_150 Hb_007317_170--Hb_004117_150 Hb_007317_170--Hb_004208_090 Hb_000130_330 Hb_000130_330 Hb_007317_170--Hb_000130_330 Hb_002400_010 Hb_002400_010 Hb_000603_270--Hb_002400_010 Hb_002498_170 Hb_002498_170 Hb_000603_270--Hb_002498_170 Hb_000340_410 Hb_000340_410 Hb_000603_270--Hb_000340_410 Hb_001352_080 Hb_001352_080 Hb_000603_270--Hb_001352_080 Hb_000322_040 Hb_000322_040 Hb_000603_270--Hb_000322_040 Hb_003055_030--Hb_004208_090 Hb_003055_030--Hb_000768_120 Hb_000637_070 Hb_000637_070 Hb_003055_030--Hb_000637_070 Hb_015026_030 Hb_015026_030 Hb_003055_030--Hb_015026_030 Hb_001338_070 Hb_001338_070 Hb_003055_030--Hb_001338_070 Hb_000049_220 Hb_000049_220 Hb_004143_030--Hb_000049_220 Hb_027380_240 Hb_027380_240 Hb_004143_030--Hb_027380_240 Hb_004143_030--Hb_007317_170 Hb_004143_030--Hb_000603_270 Hb_004738_060 Hb_004738_060 Hb_004143_030--Hb_004738_060 Hb_017043_030 Hb_017043_030 Hb_071126_010--Hb_017043_030 Hb_000186_110 Hb_000186_110 Hb_071126_010--Hb_000186_110 Hb_003861_150 Hb_003861_150 Hb_071126_010--Hb_003861_150 Hb_011649_010 Hb_011649_010 Hb_071126_010--Hb_011649_010 Hb_072212_010 Hb_072212_010 Hb_071126_010--Hb_072212_010 Hb_000118_090 Hb_000118_090 Hb_071126_010--Hb_000118_090 Hb_001999_260 Hb_001999_260 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_004208_090--Hb_000768_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5996 7.28387 184.002 20.3339 19.6065 46.6987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.71558 0 0.703538 1.33835 174.682

CAGE analysis