Hb_003861_150

Information

Type -
Description -
Location Contig3861: 170552-171456
Sequence    

Annotation

kegg
ID pop:Poptr_cp098
description ycf2; Ycf2
nr
ID KDP30738.1
description hypothetical protein JCGZ_15167 [Jatropha curcas]
swissprot
ID B1NWJ3
description Protein Ycf2 OS=Manihot esculenta GN=ycf2 PE=3 SV=1
trembl
ID A0A067K6X6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15167 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ycf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_150 0.0 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
2 Hb_007595_050 0.1024677602 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
3 Hb_005399_040 0.1422008993 - - RNA polymerase beta subunit [Hevea brasiliensis]
4 Hb_001584_210 0.1469457045 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
5 Hb_000161_010 0.1499127013 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
6 Hb_005228_060 0.1504508898 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
7 Hb_002835_090 0.1520487719 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
8 Hb_005399_050 0.1561061951 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
9 Hb_000035_340 0.1584551225 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003602_100 0.1599530725 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_116102_010 0.1599754626 - - hypothetical protein POPTR_0204s00240g [Populus trichocarpa]
12 Hb_011649_010 0.1608474309 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
13 Hb_011900_020 0.1665631149 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
14 Hb_000029_330 0.1672484987 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
15 Hb_071126_010 0.1679386849 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_005977_040 0.1697596824 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
17 Hb_185274_010 0.1713344066 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
18 Hb_011344_030 0.1723232377 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
19 Hb_010407_090 0.1723972551 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
20 Hb_002003_130 0.1739985826 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]

Gene co-expression network

sample Hb_003861_150 Hb_003861_150 Hb_007595_050 Hb_007595_050 Hb_003861_150--Hb_007595_050 Hb_005399_040 Hb_005399_040 Hb_003861_150--Hb_005399_040 Hb_001584_210 Hb_001584_210 Hb_003861_150--Hb_001584_210 Hb_000161_010 Hb_000161_010 Hb_003861_150--Hb_000161_010 Hb_005228_060 Hb_005228_060 Hb_003861_150--Hb_005228_060 Hb_002835_090 Hb_002835_090 Hb_003861_150--Hb_002835_090 Hb_007595_050--Hb_002835_090 Hb_007595_020 Hb_007595_020 Hb_007595_050--Hb_007595_020 Hb_007595_050--Hb_005228_060 Hb_011900_020 Hb_011900_020 Hb_007595_050--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_007595_050--Hb_156850_020 Hb_000261_390 Hb_000261_390 Hb_005399_040--Hb_000261_390 Hb_005399_050 Hb_005399_050 Hb_005399_040--Hb_005399_050 Hb_185274_010 Hb_185274_010 Hb_005399_040--Hb_185274_010 Hb_003963_040 Hb_003963_040 Hb_005399_040--Hb_003963_040 Hb_001135_170 Hb_001135_170 Hb_005399_040--Hb_001135_170 Hb_001488_320 Hb_001488_320 Hb_005399_040--Hb_001488_320 Hb_011344_030 Hb_011344_030 Hb_001584_210--Hb_011344_030 Hb_002003_130 Hb_002003_130 Hb_001584_210--Hb_002003_130 Hb_002333_040 Hb_002333_040 Hb_001584_210--Hb_002333_040 Hb_007044_270 Hb_007044_270 Hb_001584_210--Hb_007044_270 Hb_001517_010 Hb_001517_010 Hb_001584_210--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_001584_210--Hb_001195_290 Hb_000077_380 Hb_000077_380 Hb_000161_010--Hb_000077_380 Hb_005977_040 Hb_005977_040 Hb_000161_010--Hb_005977_040 Hb_000101_330 Hb_000101_330 Hb_000161_010--Hb_000101_330 Hb_002609_140 Hb_002609_140 Hb_000161_010--Hb_002609_140 Hb_000161_010--Hb_001584_210 Hb_007477_060 Hb_007477_060 Hb_000161_010--Hb_007477_060 Hb_005228_060--Hb_007595_020 Hb_000367_220 Hb_000367_220 Hb_005228_060--Hb_000367_220 Hb_028960_010 Hb_028960_010 Hb_005228_060--Hb_028960_010 Hb_068804_110 Hb_068804_110 Hb_005228_060--Hb_068804_110 Hb_000186_160 Hb_000186_160 Hb_005228_060--Hb_000186_160 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.196936 0.248848 2.85485 0.947388 0.251385 0.294855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.28576 0.0425947 7.39972

CAGE analysis