Hb_001488_320

Information

Type transcription factor
Description TF Family: TCP
Location Contig1488: 258859-260734
Sequence    

Annotation

kegg
ID tcc:TCM_018809
description Plastid transcription factor 1, putative isoform 1
nr
ID XP_007032773.1
description Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
swissprot
ID Q9S7W5
description Transcription factor TCP13 OS=Arabidopsis thaliana GN=TCP13 PE=1 SV=1
trembl
ID A0A061EN21
description Plastid transcription factor 1, putative isoform 1 OS=Theobroma cacao GN=TCM_018809 PE=4 SV=1
Gene Ontology
ID GO:0003700
description plastid transcription factor isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12327: 259047-260782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_320 0.0 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
2 Hb_002006_050 0.123753529 - - actin binding protein, putative [Ricinus communis]
3 Hb_005399_040 0.124062316 - - RNA polymerase beta subunit [Hevea brasiliensis]
4 Hb_000261_390 0.1301906425 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
5 Hb_003847_070 0.1315534486 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
6 Hb_020648_030 0.1337400387 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
7 Hb_000825_010 0.1351618316 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
8 Hb_107748_010 0.1363883625 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
9 Hb_002890_170 0.1364901146 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
10 Hb_003053_080 0.1366044807 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002893_200 0.1369565116 - - aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_003020_120 0.1369704258 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
13 Hb_097940_010 0.1382801786 - - pollen protein Ole E I-like protein [Medicago truncatula]
14 Hb_007559_020 0.1383129642 - - peptidylprolyl isomerase, putative [Ricinus communis]
15 Hb_082402_020 0.138811732 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
16 Hb_001279_380 0.1392704112 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
17 Hb_000083_180 0.139272079 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
18 Hb_002014_140 0.1393196649 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
19 Hb_004129_170 0.1395667794 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
20 Hb_001104_080 0.1396756535 - - peroxiredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_001488_320 Hb_001488_320 Hb_002006_050 Hb_002006_050 Hb_001488_320--Hb_002006_050 Hb_005399_040 Hb_005399_040 Hb_001488_320--Hb_005399_040 Hb_000261_390 Hb_000261_390 Hb_001488_320--Hb_000261_390 Hb_003847_070 Hb_003847_070 Hb_001488_320--Hb_003847_070 Hb_020648_030 Hb_020648_030 Hb_001488_320--Hb_020648_030 Hb_000825_010 Hb_000825_010 Hb_001488_320--Hb_000825_010 Hb_002006_050--Hb_000261_390 Hb_000805_080 Hb_000805_080 Hb_002006_050--Hb_000805_080 Hb_000010_380 Hb_000010_380 Hb_002006_050--Hb_000010_380 Hb_032631_060 Hb_032631_060 Hb_002006_050--Hb_032631_060 Hb_185830_050 Hb_185830_050 Hb_002006_050--Hb_185830_050 Hb_003053_080 Hb_003053_080 Hb_002006_050--Hb_003053_080 Hb_005399_040--Hb_000261_390 Hb_005399_050 Hb_005399_050 Hb_005399_040--Hb_005399_050 Hb_185274_010 Hb_185274_010 Hb_005399_040--Hb_185274_010 Hb_003963_040 Hb_003963_040 Hb_005399_040--Hb_003963_040 Hb_001135_170 Hb_001135_170 Hb_005399_040--Hb_001135_170 Hb_000261_390--Hb_001135_170 Hb_001832_180 Hb_001832_180 Hb_000261_390--Hb_001832_180 Hb_011344_030 Hb_011344_030 Hb_000261_390--Hb_011344_030 Hb_023344_040 Hb_023344_040 Hb_000261_390--Hb_023344_040 Hb_004631_020 Hb_004631_020 Hb_000261_390--Hb_004631_020 Hb_001287_070 Hb_001287_070 Hb_000261_390--Hb_001287_070 Hb_176135_010 Hb_176135_010 Hb_003847_070--Hb_176135_010 Hb_001856_240 Hb_001856_240 Hb_003847_070--Hb_001856_240 Hb_000083_180 Hb_000083_180 Hb_003847_070--Hb_000083_180 Hb_003020_120 Hb_003020_120 Hb_003847_070--Hb_003020_120 Hb_008748_050 Hb_008748_050 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130 Hb_020648_030--Hb_000083_180 Hb_001717_060 Hb_001717_060 Hb_020648_030--Hb_001717_060 Hb_003038_060 Hb_003038_060 Hb_020648_030--Hb_003038_060 Hb_005754_050 Hb_005754_050 Hb_020648_030--Hb_005754_050 Hb_000881_070 Hb_000881_070 Hb_020648_030--Hb_000881_070 Hb_000948_240 Hb_000948_240 Hb_020648_030--Hb_000948_240 Hb_001104_080 Hb_001104_080 Hb_000825_010--Hb_001104_080 Hb_000923_030 Hb_000923_030 Hb_000825_010--Hb_000923_030 Hb_000251_160 Hb_000251_160 Hb_000825_010--Hb_000251_160 Hb_007559_020 Hb_007559_020 Hb_000825_010--Hb_007559_020 Hb_132840_050 Hb_132840_050 Hb_000825_010--Hb_132840_050 Hb_005605_020 Hb_005605_020 Hb_000825_010--Hb_005605_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.590841 0.0145785 7.74107 1.82088 0.0175996 0.2572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0315363 0.0586957 0 17.9581

CAGE analysis