Hb_072212_010

Information

Type -
Description -
Location Contig72212: 1031-2657
Sequence    

Annotation

kegg
ID fve:10251578
description ycf1, FvH4_C0100; hypothetical chloroplast RF1
nr
ID AEK71755.1
description hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
swissprot
ID Q0G9G1
description Protein TIC 214 OS=Liriodendron tulipifera GN=TIC214 PE=3 SV=1
trembl
ID G0YDS8
description Hypothetical chloroplast RF1 (Fragment) OS=Ficus sp. M. J. Moore 315 GN=ycf1 PE=4 SV=1
Gene Ontology
ID GO:0009507
description hypothetical chloroplast rf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55707: 1115-2148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072212_010 0.0 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
2 Hb_001155_020 0.1305851078 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
3 Hb_000395_090 0.1480193485 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
4 Hb_017043_030 0.1529111189 - - hypothetical protein CISIN_1g011604mg [Citrus sinensis]
5 Hb_000053_120 0.1560681391 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
6 Hb_004611_040 0.1563876898 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001338_160 0.1569814817 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
8 Hb_000254_120 0.165272451 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003427_080 0.1659014286 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
10 Hb_005618_150 0.1659756086 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
11 Hb_002835_090 0.1780999283 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
12 Hb_071126_010 0.1814543164 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_001907_070 0.1839849604 - - 50S ribosomal protein L1p, putative [Ricinus communis]
14 Hb_003494_030 0.1844932293 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
15 Hb_002232_380 0.1845460075 - - malate dehydrogenase, putative [Ricinus communis]
16 Hb_000667_140 0.185656076 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
17 Hb_000802_050 0.1869527385 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
18 Hb_014361_110 0.1905256459 - - RNA binding protein, putative [Ricinus communis]
19 Hb_000193_220 0.1907747611 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
20 Hb_000069_370 0.1947655172 - - -

Gene co-expression network

sample Hb_072212_010 Hb_072212_010 Hb_001155_020 Hb_001155_020 Hb_072212_010--Hb_001155_020 Hb_000395_090 Hb_000395_090 Hb_072212_010--Hb_000395_090 Hb_017043_030 Hb_017043_030 Hb_072212_010--Hb_017043_030 Hb_000053_120 Hb_000053_120 Hb_072212_010--Hb_000053_120 Hb_004611_040 Hb_004611_040 Hb_072212_010--Hb_004611_040 Hb_001338_160 Hb_001338_160 Hb_072212_010--Hb_001338_160 Hb_001155_020--Hb_001338_160 Hb_003963_040 Hb_003963_040 Hb_001155_020--Hb_003963_040 Hb_001155_020--Hb_004611_040 Hb_002835_090 Hb_002835_090 Hb_001155_020--Hb_002835_090 Hb_001338_150 Hb_001338_150 Hb_001155_020--Hb_001338_150 Hb_000395_090--Hb_000053_120 Hb_003427_080 Hb_003427_080 Hb_000395_090--Hb_003427_080 Hb_005618_150 Hb_005618_150 Hb_000395_090--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_000395_090--Hb_001307_040 Hb_007313_060 Hb_007313_060 Hb_000395_090--Hb_007313_060 Hb_071126_010 Hb_071126_010 Hb_017043_030--Hb_071126_010 Hb_005288_180 Hb_005288_180 Hb_017043_030--Hb_005288_180 Hb_004324_120 Hb_004324_120 Hb_017043_030--Hb_004324_120 Hb_137600_010 Hb_137600_010 Hb_017043_030--Hb_137600_010 Hb_000069_500 Hb_000069_500 Hb_017043_030--Hb_000069_500 Hb_000053_120--Hb_003427_080 Hb_006062_030 Hb_006062_030 Hb_000053_120--Hb_006062_030 Hb_024714_080 Hb_024714_080 Hb_000053_120--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_000053_120--Hb_003077_130 Hb_000069_490 Hb_000069_490 Hb_000053_120--Hb_000069_490 Hb_000402_170 Hb_000402_170 Hb_000053_120--Hb_000402_170 Hb_004611_040--Hb_003427_080 Hb_004611_040--Hb_002835_090 Hb_000667_140 Hb_000667_140 Hb_004611_040--Hb_000667_140 Hb_004611_040--Hb_000402_170 Hb_004611_040--Hb_001338_160 Hb_001338_160--Hb_003963_040 Hb_001338_160--Hb_001338_150 Hb_162094_010 Hb_162094_010 Hb_001338_160--Hb_162094_010 Hb_003032_090 Hb_003032_090 Hb_001338_160--Hb_003032_090 Hb_001338_160--Hb_002835_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.145378 0.278429 1.58139 0.240943 0.511253 0.556651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127169 0.149997 0.0908066 0.121243 3.72982

CAGE analysis