Hb_001338_150

Information

Type -
Description -
Location Contig1338: 137445-138614
Sequence    

Annotation

kegg
ID fve:10251578
description ycf1, FvH4_C0100; hypothetical chloroplast RF1
nr
ID AEK71674.1
description hypothetical chloroplast RF1 [Dillenia indica]
swissprot
ID A4QJQ8
description Protein TIC 214 OS=Aethionema grandiflorum GN=TIC214 PE=3 SV=1
trembl
ID G0YDJ7
description Hypothetical chloroplast RF1 (Fragment) OS=Dillenia indica GN=ycf1 PE=4 SV=1
Gene Ontology
ID GO:0009706
description hypothetical chloroplast rf19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_150 0.0 - - hypothetical chloroplast RF1 [Dillenia indica]
2 Hb_003032_090 0.0811339037 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
3 Hb_003963_040 0.0894009951 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
4 Hb_003693_030 0.1167598703 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
5 Hb_001338_160 0.1297072934 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
6 Hb_003693_020 0.1344242129 - - Ycf1, partial (chloroplast) [Clusia rosea]
7 Hb_000156_240 0.140116455 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
8 Hb_031194_010 0.1402773057 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
9 Hb_003693_060 0.1427954706 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
10 Hb_162094_010 0.1434347794 - - RNA polymerase alpha subunit [Hevea brasiliensis]
11 Hb_185274_020 0.1484964179 - - Ycf2 (chloroplast) [Andrographis paniculata]
12 Hb_051924_010 0.1601590647 - - BnaA01g34100D [Brassica napus]
13 Hb_088080_040 0.1625831077 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
14 Hb_001155_020 0.1632962633 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
15 Hb_103465_010 0.1635091785 - - RNA polymerase beta subunit [Hevea brasiliensis]
16 Hb_001338_080 0.1657550025 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
17 Hb_006925_030 0.1717844156 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
18 Hb_001645_020 0.1718655791 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
19 Hb_182972_020 0.1757553329 - - cytochrome b6 [Gossypium barbadense]
20 Hb_019253_040 0.1807552805 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001338_150 Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_001338_150--Hb_003032_090 Hb_003963_040 Hb_003963_040 Hb_001338_150--Hb_003963_040 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_001338_160 Hb_001338_160 Hb_001338_150--Hb_001338_160 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_000156_240 Hb_000156_240 Hb_001338_150--Hb_000156_240 Hb_003032_090--Hb_003963_040 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_003032_090--Hb_000156_240 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090 Hb_003963_040--Hb_001338_160 Hb_005399_040 Hb_005399_040 Hb_003963_040--Hb_005399_040 Hb_003963_040--Hb_000156_240 Hb_005399_050 Hb_005399_050 Hb_003963_040--Hb_005399_050 Hb_000627_200 Hb_000627_200 Hb_003693_030--Hb_000627_200 Hb_051924_010 Hb_051924_010 Hb_003693_030--Hb_051924_010 Hb_182972_020 Hb_182972_020 Hb_003693_030--Hb_182972_020 Hb_001645_020 Hb_001645_020 Hb_003693_030--Hb_001645_020 Hb_001338_080 Hb_001338_080 Hb_003693_030--Hb_001338_080 Hb_001155_020 Hb_001155_020 Hb_001338_160--Hb_001155_020 Hb_162094_010 Hb_162094_010 Hb_001338_160--Hb_162094_010 Hb_001338_160--Hb_002835_090 Hb_003693_020--Hb_000156_240 Hb_031194_010 Hb_031194_010 Hb_003693_020--Hb_031194_010 Hb_002027_420 Hb_002027_420 Hb_003693_020--Hb_002027_420 Hb_003693_020--Hb_003963_040 Hb_019253_040 Hb_019253_040 Hb_003693_020--Hb_019253_040 Hb_004542_030 Hb_004542_030 Hb_003693_020--Hb_004542_030 Hb_103465_010 Hb_103465_010 Hb_000156_240--Hb_103465_010 Hb_001083_040 Hb_001083_040 Hb_000156_240--Hb_001083_040 Hb_000156_240--Hb_004542_030 Hb_000156_240--Hb_002027_420 Hb_000156_240--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_000156_240--Hb_004811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.885814 0.308496 2.57456 0.585081 0.829129 1.3237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0660619 0.103891 0.0941013 0.231153 22.3502

CAGE analysis