Hb_003693_020

Information

Type -
Description -
Location Contig3693: 52053-57539
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00101
description ycf1; hypothetical chloroplast RF1
nr
ID AFU96754.1
description Ycf1, partial (chloroplast) [Clusia rosea]
swissprot
ID Q14FA0
description Protein TIC 214 OS=Populus alba GN=TIC214 PE=3 SV=1
trembl
ID K4KCL5
description Ycf1 (Fragment) OS=Clusia rosea GN=ycf1 PE=4 SV=1
Gene Ontology
ID GO:0009507
description hypothetical chloroplast rf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003693_020 0.0 - - Ycf1, partial (chloroplast) [Clusia rosea]
2 Hb_000156_240 0.1113915266 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
3 Hb_031194_010 0.1233886544 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
4 Hb_002027_420 0.1278474459 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
5 Hb_003963_040 0.1295582754 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
6 Hb_019253_040 0.1306141667 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004542_030 0.1326248085 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
8 Hb_001338_150 0.1344242129 - - hypothetical chloroplast RF1 [Dillenia indica]
9 Hb_004811_010 0.1351084153 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
10 Hb_106552_030 0.1380967767 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
11 Hb_003693_060 0.1412248266 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
12 Hb_073490_010 0.1433813876 - - NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
13 Hb_001338_080 0.1465291123 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
14 Hb_007645_070 0.1503832053 - - photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]
15 Hb_001645_020 0.1508803607 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
16 Hb_004010_080 0.1521005558 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_182972_020 0.1545496245 - - cytochrome b6 [Gossypium barbadense]
18 Hb_088080_040 0.1546531489 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
19 Hb_103465_010 0.1549181341 - - RNA polymerase beta subunit [Hevea brasiliensis]
20 Hb_000832_050 0.1549581917 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]

Gene co-expression network

sample Hb_003693_020 Hb_003693_020 Hb_000156_240 Hb_000156_240 Hb_003693_020--Hb_000156_240 Hb_031194_010 Hb_031194_010 Hb_003693_020--Hb_031194_010 Hb_002027_420 Hb_002027_420 Hb_003693_020--Hb_002027_420 Hb_003963_040 Hb_003963_040 Hb_003693_020--Hb_003963_040 Hb_019253_040 Hb_019253_040 Hb_003693_020--Hb_019253_040 Hb_004542_030 Hb_004542_030 Hb_003693_020--Hb_004542_030 Hb_103465_010 Hb_103465_010 Hb_000156_240--Hb_103465_010 Hb_001083_040 Hb_001083_040 Hb_000156_240--Hb_001083_040 Hb_000156_240--Hb_004542_030 Hb_000156_240--Hb_002027_420 Hb_000156_240--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_000156_240--Hb_004811_010 Hb_088080_040 Hb_088080_040 Hb_031194_010--Hb_088080_040 Hb_003693_060 Hb_003693_060 Hb_031194_010--Hb_003693_060 Hb_031194_010--Hb_004811_010 Hb_007645_060 Hb_007645_060 Hb_031194_010--Hb_007645_060 Hb_001338_170 Hb_001338_170 Hb_031194_010--Hb_001338_170 Hb_002027_420--Hb_004542_030 Hb_001951_040 Hb_001951_040 Hb_002027_420--Hb_001951_040 Hb_007122_010 Hb_007122_010 Hb_002027_420--Hb_007122_010 Hb_003362_050 Hb_003362_050 Hb_002027_420--Hb_003362_050 Hb_001135_190 Hb_001135_190 Hb_002027_420--Hb_001135_190 Hb_001338_150 Hb_001338_150 Hb_003963_040--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_003963_040--Hb_003032_090 Hb_001338_160 Hb_001338_160 Hb_003963_040--Hb_001338_160 Hb_005399_040 Hb_005399_040 Hb_003963_040--Hb_005399_040 Hb_003963_040--Hb_000156_240 Hb_005399_050 Hb_005399_050 Hb_003963_040--Hb_005399_050 Hb_019253_040--Hb_007645_060 Hb_182972_020 Hb_182972_020 Hb_019253_040--Hb_182972_020 Hb_019253_040--Hb_004811_010 Hb_051924_010 Hb_051924_010 Hb_019253_040--Hb_051924_010 Hb_151890_020 Hb_151890_020 Hb_019253_040--Hb_151890_020 Hb_001338_080 Hb_001338_080 Hb_019253_040--Hb_001338_080 Hb_004542_030--Hb_001083_040 Hb_004542_030--Hb_001135_190 Hb_004542_030--Hb_004811_010 Hb_000832_050 Hb_000832_050 Hb_004542_030--Hb_000832_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0662123 0.0122231 0.681691 0.181306 0.0986522 0.102666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0336294 0.0793686 0 0.0528498 5.1882

CAGE analysis