Hb_002027_420

Information

Type -
Description -
Location Contig2027: 257599-260315
Sequence    

Annotation

kegg
ID pop:POPTR_0020s00240g
description hypothetical protein
nr
ID XP_006389665.1
description hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
swissprot
ID Q9FVQ0
description Probable indole-3-pyruvate monooxygenase YUCCA10 OS=Arabidopsis thaliana GN=YUC10 PE=2 SV=1
trembl
ID U7E1S1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0020s00240g PE=4 SV=1
Gene Ontology
ID GO:0004499
description probable indole-3-pyruvate monooxygenase yucca10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20730: 258075-259353 , PASA_asmbl_20731: 259581-259828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_420 0.0 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
2 Hb_004542_030 0.0841764591 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
3 Hb_001951_040 0.0994127006 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
4 Hb_007122_010 0.1009116759 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
5 Hb_000156_240 0.1013798267 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
6 Hb_003362_050 0.1054439341 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
7 Hb_001135_190 0.107780579 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
8 Hb_011689_070 0.1086694641 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
9 Hb_000282_100 0.1109114228 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
10 Hb_000349_150 0.1112085646 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
11 Hb_000922_110 0.1122063759 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
12 Hb_006040_090 0.1129618799 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
13 Hb_000992_090 0.1150981881 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
14 Hb_106552_030 0.1155011501 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
15 Hb_001210_110 0.1160511837 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
16 Hb_004811_010 0.1169905765 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
17 Hb_001135_170 0.1182953437 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
18 Hb_020805_090 0.119830579 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_001001_130 0.1203617557 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
20 Hb_004150_020 0.1203869809 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_420 Hb_002027_420 Hb_004542_030 Hb_004542_030 Hb_002027_420--Hb_004542_030 Hb_001951_040 Hb_001951_040 Hb_002027_420--Hb_001951_040 Hb_007122_010 Hb_007122_010 Hb_002027_420--Hb_007122_010 Hb_000156_240 Hb_000156_240 Hb_002027_420--Hb_000156_240 Hb_003362_050 Hb_003362_050 Hb_002027_420--Hb_003362_050 Hb_001135_190 Hb_001135_190 Hb_002027_420--Hb_001135_190 Hb_001083_040 Hb_001083_040 Hb_004542_030--Hb_001083_040 Hb_004542_030--Hb_000156_240 Hb_004542_030--Hb_001135_190 Hb_004811_010 Hb_004811_010 Hb_004542_030--Hb_004811_010 Hb_000832_050 Hb_000832_050 Hb_004542_030--Hb_000832_050 Hb_005736_030 Hb_005736_030 Hb_001951_040--Hb_005736_030 Hb_001951_040--Hb_001135_190 Hb_020805_090 Hb_020805_090 Hb_001951_040--Hb_020805_090 Hb_004631_020 Hb_004631_020 Hb_001951_040--Hb_004631_020 Hb_001951_040--Hb_007122_010 Hb_004855_030 Hb_004855_030 Hb_001951_040--Hb_004855_030 Hb_000282_100 Hb_000282_100 Hb_007122_010--Hb_000282_100 Hb_004712_230 Hb_004712_230 Hb_007122_010--Hb_004712_230 Hb_001289_050 Hb_001289_050 Hb_007122_010--Hb_001289_050 Hb_000029_390 Hb_000029_390 Hb_007122_010--Hb_000029_390 Hb_007122_010--Hb_004631_020 Hb_103465_010 Hb_103465_010 Hb_000156_240--Hb_103465_010 Hb_000156_240--Hb_001083_040 Hb_031194_010 Hb_031194_010 Hb_000156_240--Hb_031194_010 Hb_000156_240--Hb_004811_010 Hb_003362_050--Hb_001135_190 Hb_000992_090 Hb_000992_090 Hb_003362_050--Hb_000992_090 Hb_000103_240 Hb_000103_240 Hb_003362_050--Hb_000103_240 Hb_003362_050--Hb_001083_040 Hb_003362_050--Hb_000029_390 Hb_001135_170 Hb_001135_170 Hb_001135_190--Hb_001135_170 Hb_001135_190--Hb_000282_100 Hb_001135_190--Hb_000029_390 Hb_000349_150 Hb_000349_150 Hb_001135_190--Hb_000349_150 Hb_001135_190--Hb_004855_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.306986 0.798936 8.65305 1.74807 0.215375 0.0929396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317692 0.124977 0.078668 0.564349 57.2277

CAGE analysis