Hb_031194_010

Information

Type -
Description -
Location Contig31194: 258-833
Sequence    

Annotation

kegg
ID cam:6797520
description ndhB, CiarC_p062; NADH dehydrogenase subunit 2
nr
ID YP_009127155.1
description NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
swissprot
ID P0CC65
description NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Gossypium barbadense GN=ndhB2 PE=3 SV=1
trembl
ID A0A0C4KPN2
description NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Arachis hypogaea GN=ndhB PE=3 SV=1
Gene Ontology
ID GO:0005739
description nadh-plastoquinone oxidoreductase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031194_010 0.0 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
2 Hb_088080_040 0.0759073443 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
3 Hb_003693_060 0.0787419775 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
4 Hb_004811_010 0.0908536112 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
5 Hb_000156_240 0.1029848712 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
6 Hb_007645_060 0.104692523 - - cytochrome f [Hevea brasiliensis]
7 Hb_001338_170 0.1073280656 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
8 Hb_103465_010 0.1131555541 - - RNA polymerase beta subunit [Hevea brasiliensis]
9 Hb_001645_020 0.1179442281 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
10 Hb_051924_010 0.1209563401 - - BnaA01g34100D [Brassica napus]
11 Hb_182972_020 0.1216413875 - - cytochrome b6 [Gossypium barbadense]
12 Hb_000627_200 0.1227677228 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
13 Hb_003693_020 0.1233886544 - - Ycf1, partial (chloroplast) [Clusia rosea]
14 Hb_179142_010 0.1253471511 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
15 Hb_149598_010 0.1283386747 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
16 Hb_151890_020 0.1337124242 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
17 Hb_159308_010 0.1366519425 - - ribosomal protein S4 [Cercidiphyllum japonicum]
18 Hb_019253_040 0.1399666569 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001338_150 0.1402773057 - - hypothetical chloroplast RF1 [Dillenia indica]
20 Hb_002027_420 0.1432574713 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]

Gene co-expression network

sample Hb_031194_010 Hb_031194_010 Hb_088080_040 Hb_088080_040 Hb_031194_010--Hb_088080_040 Hb_003693_060 Hb_003693_060 Hb_031194_010--Hb_003693_060 Hb_004811_010 Hb_004811_010 Hb_031194_010--Hb_004811_010 Hb_000156_240 Hb_000156_240 Hb_031194_010--Hb_000156_240 Hb_007645_060 Hb_007645_060 Hb_031194_010--Hb_007645_060 Hb_001338_170 Hb_001338_170 Hb_031194_010--Hb_001338_170 Hb_088080_040--Hb_004811_010 Hb_088080_040--Hb_007645_060 Hb_088080_040--Hb_003693_060 Hb_088080_040--Hb_001338_170 Hb_179142_010 Hb_179142_010 Hb_088080_040--Hb_179142_010 Hb_103465_010 Hb_103465_010 Hb_003693_060--Hb_103465_010 Hb_003693_060--Hb_004811_010 Hb_003693_060--Hb_000156_240 Hb_003963_040 Hb_003963_040 Hb_003693_060--Hb_003963_040 Hb_004811_010--Hb_007645_060 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_149598_010 Hb_149598_010 Hb_004811_010--Hb_149598_010 Hb_151890_020 Hb_151890_020 Hb_004811_010--Hb_151890_020 Hb_000156_240--Hb_103465_010 Hb_001083_040 Hb_001083_040 Hb_000156_240--Hb_001083_040 Hb_004542_030 Hb_004542_030 Hb_000156_240--Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_000156_240--Hb_002027_420 Hb_000156_240--Hb_004811_010 Hb_007645_050 Hb_007645_050 Hb_007645_060--Hb_007645_050 Hb_182972_020 Hb_182972_020 Hb_007645_060--Hb_182972_020 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_007645_060--Hb_001338_170 Hb_001338_170--Hb_149598_010 Hb_001338_170--Hb_007645_050 Hb_159308_010 Hb_159308_010 Hb_001338_170--Hb_159308_010 Hb_001338_170--Hb_000627_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.375079 0.18258 2.03464 0.382806 0.355219 0.40352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118612 0 0 0 22.3069

CAGE analysis