Hb_159308_010

Information

Type -
Description -
Location Contig159308: 288-901
Sequence    

Annotation

kegg
ID egr:9829653
description rps4, EucgrC_p022; ribosomal protein S4
nr
ID BAH70342.1
description ribosomal protein S4 [Cercidiphyllum japonicum]
swissprot
ID A6MM38
description 30S ribosomal protein S4, chloroplastic OS=Buxus microphylla GN=rps4 PE=3 SV=1
trembl
ID C4TMY1
description 30S ribosomal protein S4, chloroplastic OS=Cercidiphyllum japonicum GN=rps4 PE=3 SV=1
Gene Ontology
ID GO:0030529
description ribosomal protein s4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159308_010 0.0 - - ribosomal protein S4 [Cercidiphyllum japonicum]
2 Hb_088080_010 0.0833269079 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
3 Hb_007595_030 0.0843362773 - - psbA gene product (chloroplast) [Silene noctiflora]
4 Hb_007645_060 0.0887804769 - - cytochrome f [Hevea brasiliensis]
5 Hb_007645_050 0.0899089659 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
6 Hb_006040_090 0.09001475 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
7 Hb_149598_010 0.0924742602 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
8 Hb_001338_170 0.092796737 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
9 Hb_000922_110 0.0960318081 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
10 Hb_004150_020 0.0962191405 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_000832_050 0.0989837217 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
12 Hb_000853_280 0.1009934056 - - PREDICTED: extensin-like [Jatropha curcas]
13 Hb_000648_150 0.1015505205 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
14 Hb_003963_030 0.101684742 - - psbB [Jatropha curcas]
15 Hb_063885_010 0.1024878571 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
16 Hb_031194_030 0.1024991753 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
17 Hb_007933_010 0.1037391443 - - ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_015981_010 0.1044919993 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003053_100 0.1055949918 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
20 Hb_003120_090 0.1062470797 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]

Gene co-expression network

sample Hb_159308_010 Hb_159308_010 Hb_088080_010 Hb_088080_010 Hb_159308_010--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_159308_010--Hb_007595_030 Hb_007645_060 Hb_007645_060 Hb_159308_010--Hb_007645_060 Hb_007645_050 Hb_007645_050 Hb_159308_010--Hb_007645_050 Hb_006040_090 Hb_006040_090 Hb_159308_010--Hb_006040_090 Hb_149598_010 Hb_149598_010 Hb_159308_010--Hb_149598_010 Hb_088080_010--Hb_007595_030 Hb_031194_030 Hb_031194_030 Hb_088080_010--Hb_031194_030 Hb_088080_010--Hb_007645_050 Hb_003963_030 Hb_003963_030 Hb_088080_010--Hb_003963_030 Hb_005018_050 Hb_005018_050 Hb_088080_010--Hb_005018_050 Hb_003120_090 Hb_003120_090 Hb_088080_010--Hb_003120_090 Hb_007595_030--Hb_007645_050 Hb_007595_030--Hb_031194_030 Hb_007595_030--Hb_003963_030 Hb_007595_030--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_007595_030--Hb_003407_050 Hb_007645_060--Hb_007645_050 Hb_182972_020 Hb_182972_020 Hb_007645_060--Hb_182972_020 Hb_007645_060--Hb_149598_010 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_001338_170 Hb_001338_170 Hb_007645_060--Hb_001338_170 Hb_007645_050--Hb_003963_030 Hb_007645_050--Hb_031194_030 Hb_154980_010 Hb_154980_010 Hb_007645_050--Hb_154980_010 Hb_006495_030 Hb_006495_030 Hb_006040_090--Hb_006495_030 Hb_001210_110 Hb_001210_110 Hb_006040_090--Hb_001210_110 Hb_003053_090 Hb_003053_090 Hb_006040_090--Hb_003053_090 Hb_003053_100 Hb_003053_100 Hb_006040_090--Hb_003053_100 Hb_002040_070 Hb_002040_070 Hb_006040_090--Hb_002040_070 Hb_004150_020 Hb_004150_020 Hb_006040_090--Hb_004150_020 Hb_149598_010--Hb_007645_050 Hb_149598_010--Hb_007595_030 Hb_149598_010--Hb_088080_010 Hb_149598_010--Hb_001338_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.222321 3.52128 1.43874 0 0.456201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.166364 0 0 0.165307 49.7088

CAGE analysis