Hb_004811_010

Information

Type -
Description -
Location Contig4811: 24736-26950
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00014
description atpA; ATP synthase CF1 alpha subunit
nr
ID XP_003605608.1
description DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
swissprot
ID B1NWD5
description ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1
trembl
ID K4K5T1
description ATP synthase subunit alpha, chloroplastic (Fragment) OS=Byrsonima crassifolia GN=atpA PE=3 SV=1
Gene Ontology
ID GO:0005886
description atp synthase cf1 alpha partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004811_010 0.0 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
2 Hb_007645_060 0.0837830559 - - cytochrome f [Hevea brasiliensis]
3 Hb_088080_040 0.0856734101 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
4 Hb_031194_010 0.0908536112 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
5 Hb_006040_090 0.0961951675 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
6 Hb_149598_010 0.0973972802 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
7 Hb_151890_020 0.1029708714 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
8 Hb_103465_010 0.1041491427 - - RNA polymerase beta subunit [Hevea brasiliensis]
9 Hb_000156_240 0.1071979996 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
10 Hb_003693_060 0.1072565442 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
11 Hb_179142_010 0.108421172 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
12 Hb_003053_100 0.1086550478 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
13 Hb_007645_050 0.1086763559 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
14 Hb_088080_010 0.1091806804 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
15 Hb_004542_030 0.1099493537 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
16 Hb_006495_030 0.1105674274 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
17 Hb_001338_170 0.1106574857 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
18 Hb_182972_020 0.1115161505 - - cytochrome b6 [Gossypium barbadense]
19 Hb_019253_040 0.1116595837 - - conserved hypothetical protein [Ricinus communis]
20 Hb_159308_010 0.1154585596 - - ribosomal protein S4 [Cercidiphyllum japonicum]

Gene co-expression network

sample Hb_004811_010 Hb_004811_010 Hb_007645_060 Hb_007645_060 Hb_004811_010--Hb_007645_060 Hb_088080_040 Hb_088080_040 Hb_004811_010--Hb_088080_040 Hb_031194_010 Hb_031194_010 Hb_004811_010--Hb_031194_010 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_149598_010 Hb_149598_010 Hb_004811_010--Hb_149598_010 Hb_151890_020 Hb_151890_020 Hb_004811_010--Hb_151890_020 Hb_007645_050 Hb_007645_050 Hb_007645_060--Hb_007645_050 Hb_182972_020 Hb_182972_020 Hb_007645_060--Hb_182972_020 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_001338_170 Hb_001338_170 Hb_007645_060--Hb_001338_170 Hb_088080_040--Hb_031194_010 Hb_088080_040--Hb_007645_060 Hb_003693_060 Hb_003693_060 Hb_088080_040--Hb_003693_060 Hb_088080_040--Hb_001338_170 Hb_179142_010 Hb_179142_010 Hb_088080_040--Hb_179142_010 Hb_031194_010--Hb_003693_060 Hb_000156_240 Hb_000156_240 Hb_031194_010--Hb_000156_240 Hb_031194_010--Hb_007645_060 Hb_031194_010--Hb_001338_170 Hb_006495_030 Hb_006495_030 Hb_006040_090--Hb_006495_030 Hb_001210_110 Hb_001210_110 Hb_006040_090--Hb_001210_110 Hb_003053_090 Hb_003053_090 Hb_006040_090--Hb_003053_090 Hb_003053_100 Hb_003053_100 Hb_006040_090--Hb_003053_100 Hb_002040_070 Hb_002040_070 Hb_006040_090--Hb_002040_070 Hb_004150_020 Hb_004150_020 Hb_006040_090--Hb_004150_020 Hb_149598_010--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_149598_010--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_149598_010--Hb_088080_010 Hb_149598_010--Hb_001338_170 Hb_159308_010 Hb_159308_010 Hb_149598_010--Hb_159308_010 Hb_151890_020--Hb_007645_060 Hb_151890_020--Hb_003963_030 Hb_151890_020--Hb_007645_050 Hb_151890_020--Hb_182972_020 Hb_151890_020--Hb_007595_030 Hb_151890_020--Hb_088080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.95326 2.33 61.5636 6.33111 5.64823 4.27137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.591477 0.651189 1.61241 0.844486 648.797

CAGE analysis