Hb_003693_060

Information

Type -
Description -
Location Contig3693: 72967-74364
Sequence    

Annotation

kegg
ID mtr:MTR_4g006110
description NAD(P)H-quinone oxidoreductase subunit 6
nr
ID XP_003604160.1
description NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
swissprot
ID B5LMS3
description NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cicer arietinum GN=ndhG PE=3 SV=1
trembl
ID G7JVM0
description NADH-ubiquinone/plastoquinone oxidoreductase chain 6 OS=Medicago truncatula GN=MTR_4g006110 PE=3 SV=1
Gene Ontology
ID GO:0009535
description nadh-plastoquinone oxidoreductase subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38006: 72439-73017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003693_060 0.0 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
2 Hb_031194_010 0.0787419775 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
3 Hb_088080_040 0.0901350547 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
4 Hb_103465_010 0.0922072724 - - RNA polymerase beta subunit [Hevea brasiliensis]
5 Hb_004811_010 0.1072565442 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
6 Hb_000156_240 0.123013118 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
7 Hb_003963_040 0.1366736095 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
8 Hb_001338_170 0.136753563 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
9 Hb_003693_020 0.1412248266 - - Ycf1, partial (chloroplast) [Clusia rosea]
10 Hb_001338_150 0.1427954706 - - hypothetical chloroplast RF1 [Dillenia indica]
11 Hb_179142_010 0.1469248042 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
12 Hb_001645_020 0.1492601846 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
13 Hb_007645_060 0.1497142297 - - cytochrome f [Hevea brasiliensis]
14 Hb_002027_420 0.1510198771 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
15 Hb_006040_090 0.1522182311 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
16 Hb_005399_040 0.1534555117 - - RNA polymerase beta subunit [Hevea brasiliensis]
17 Hb_149598_010 0.1537755032 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
18 Hb_027638_010 0.1545590732 - - Protein KES1, putative [Ricinus communis]
19 Hb_185274_010 0.1546354336 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
20 Hb_004542_030 0.1559593247 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]

Gene co-expression network

sample Hb_003693_060 Hb_003693_060 Hb_031194_010 Hb_031194_010 Hb_003693_060--Hb_031194_010 Hb_088080_040 Hb_088080_040 Hb_003693_060--Hb_088080_040 Hb_103465_010 Hb_103465_010 Hb_003693_060--Hb_103465_010 Hb_004811_010 Hb_004811_010 Hb_003693_060--Hb_004811_010 Hb_000156_240 Hb_000156_240 Hb_003693_060--Hb_000156_240 Hb_003963_040 Hb_003963_040 Hb_003693_060--Hb_003963_040 Hb_031194_010--Hb_088080_040 Hb_031194_010--Hb_004811_010 Hb_031194_010--Hb_000156_240 Hb_007645_060 Hb_007645_060 Hb_031194_010--Hb_007645_060 Hb_001338_170 Hb_001338_170 Hb_031194_010--Hb_001338_170 Hb_088080_040--Hb_004811_010 Hb_088080_040--Hb_007645_060 Hb_088080_040--Hb_001338_170 Hb_179142_010 Hb_179142_010 Hb_088080_040--Hb_179142_010 Hb_103465_010--Hb_000156_240 Hb_001083_040 Hb_001083_040 Hb_103465_010--Hb_001083_040 Hb_103465_010--Hb_004811_010 Hb_103465_010--Hb_031194_010 Hb_004542_030 Hb_004542_030 Hb_103465_010--Hb_004542_030 Hb_004811_010--Hb_007645_060 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_149598_010 Hb_149598_010 Hb_004811_010--Hb_149598_010 Hb_151890_020 Hb_151890_020 Hb_004811_010--Hb_151890_020 Hb_000156_240--Hb_001083_040 Hb_000156_240--Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_000156_240--Hb_002027_420 Hb_000156_240--Hb_004811_010 Hb_001338_150 Hb_001338_150 Hb_003963_040--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_003963_040--Hb_003032_090 Hb_001338_160 Hb_001338_160 Hb_003963_040--Hb_001338_160 Hb_005399_040 Hb_005399_040 Hb_003963_040--Hb_005399_040 Hb_003963_040--Hb_000156_240 Hb_005399_050 Hb_005399_050 Hb_003963_040--Hb_005399_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.210092 0.101405 1.32291 0.0907975 0.1609 0.187139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 9.37095

CAGE analysis