Hb_003032_090

Information

Type -
Description -
Location Contig3032: 117936-120080
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06450g
description hypothetical protein
nr
ID XP_006371932.1
description hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
swissprot
ID O82380
description Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1
trembl
ID U5FHH6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06450g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31999: 118864-119364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003032_090 0.0 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
2 Hb_001338_150 0.0811339037 - - hypothetical chloroplast RF1 [Dillenia indica]
3 Hb_003963_040 0.0961915124 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
4 Hb_185274_020 0.1352939382 - - Ycf2 (chloroplast) [Andrographis paniculata]
5 Hb_000156_240 0.1377575188 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
6 Hb_001338_160 0.1490060108 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
7 Hb_002835_090 0.1495197264 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
8 Hb_006816_040 0.1507571416 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
9 Hb_162094_010 0.1518743988 - - RNA polymerase alpha subunit [Hevea brasiliensis]
10 Hb_007595_050 0.1585372068 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
11 Hb_006925_030 0.1588615865 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
12 Hb_003693_030 0.1591695221 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
13 Hb_032733_010 0.1600642599 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
14 Hb_003693_020 0.1631780174 - - Ycf1, partial (chloroplast) [Clusia rosea]
15 Hb_000029_380 0.1650942181 - - conserved hypothetical protein [Ricinus communis]
16 Hb_034168_010 0.1663948232 - - hypothetical protein [Azospirillum sp. CAG:260]
17 Hb_031194_010 0.1675006369 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
18 Hb_185274_010 0.1682504095 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
19 Hb_106552_030 0.1686916602 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
20 Hb_189099_020 0.1693097535 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_003032_090 Hb_003032_090 Hb_001338_150 Hb_001338_150 Hb_003032_090--Hb_001338_150 Hb_003963_040 Hb_003963_040 Hb_003032_090--Hb_003963_040 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_000156_240 Hb_000156_240 Hb_003032_090--Hb_000156_240 Hb_001338_160 Hb_001338_160 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090 Hb_001338_150--Hb_003963_040 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_001338_150--Hb_001338_160 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_001338_150--Hb_000156_240 Hb_003963_040--Hb_001338_160 Hb_005399_040 Hb_005399_040 Hb_003963_040--Hb_005399_040 Hb_003963_040--Hb_000156_240 Hb_005399_050 Hb_005399_050 Hb_003963_040--Hb_005399_050 Hb_001083_040 Hb_001083_040 Hb_185274_020--Hb_001083_040 Hb_003125_100 Hb_003125_100 Hb_185274_020--Hb_003125_100 Hb_185274_020--Hb_000156_240 Hb_000029_380 Hb_000029_380 Hb_185274_020--Hb_000029_380 Hb_185274_010 Hb_185274_010 Hb_185274_020--Hb_185274_010 Hb_103465_010 Hb_103465_010 Hb_000156_240--Hb_103465_010 Hb_000156_240--Hb_001083_040 Hb_004542_030 Hb_004542_030 Hb_000156_240--Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_000156_240--Hb_002027_420 Hb_031194_010 Hb_031194_010 Hb_000156_240--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_000156_240--Hb_004811_010 Hb_001155_020 Hb_001155_020 Hb_001338_160--Hb_001155_020 Hb_162094_010 Hb_162094_010 Hb_001338_160--Hb_162094_010 Hb_001338_160--Hb_002835_090 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_011900_020 Hb_011900_020 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.228725 0.183767 0.615528 0.264723 0.267224 0.219384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0208884 0.016436 0.0624487 0.0653479 5.42943

CAGE analysis