Hb_003125_100

Information

Type -
Description -
Location Contig3125: 58279-62699
Sequence    

Annotation

kegg
ID tcc:TCM_014642
description NAD(P)-binding Rossmann-fold superfamily protein
nr
ID XP_007037983.1
description NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
swissprot
ID O23034
description Ubiquitin-like modifier-activating enzyme 5 OS=Arabidopsis thaliana GN=At1g05350 PE=3 SV=2
trembl
ID A0A061G615
description NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_014642 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33049: 61677-62299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_100 0.0 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
2 Hb_185274_020 0.1192549327 - - Ycf2 (chloroplast) [Andrographis paniculata]
3 Hb_001083_040 0.1305827965 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
4 Hb_189099_020 0.1451872866 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
5 Hb_034168_010 0.1574975692 - - hypothetical protein [Azospirillum sp. CAG:260]
6 Hb_041813_060 0.1596469454 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
7 Hb_062273_010 0.1614746201 - - ATP synthase F0 subunit 9 [Chara vulgaris]
8 Hb_062192_030 0.1631791826 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
9 Hb_013420_010 0.1705797906 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006925_030 0.1727649952 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
11 Hb_000029_380 0.1734574993 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000920_020 0.1740780264 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
13 Hb_006816_040 0.1758025913 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
14 Hb_034455_010 0.177286025 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_003362_050 0.178764025 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
16 Hb_072212_020 0.179084456 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
17 Hb_000156_240 0.1792790117 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
18 Hb_088080_030 0.1799941918 - - ribosomal protein S4 [Hevea brasiliensis]
19 Hb_004374_090 0.1809527753 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
20 Hb_171685_070 0.1817363532 - - -

Gene co-expression network

sample Hb_003125_100 Hb_003125_100 Hb_185274_020 Hb_185274_020 Hb_003125_100--Hb_185274_020 Hb_001083_040 Hb_001083_040 Hb_003125_100--Hb_001083_040 Hb_189099_020 Hb_189099_020 Hb_003125_100--Hb_189099_020 Hb_034168_010 Hb_034168_010 Hb_003125_100--Hb_034168_010 Hb_041813_060 Hb_041813_060 Hb_003125_100--Hb_041813_060 Hb_062273_010 Hb_062273_010 Hb_003125_100--Hb_062273_010 Hb_185274_020--Hb_001083_040 Hb_000156_240 Hb_000156_240 Hb_185274_020--Hb_000156_240 Hb_003032_090 Hb_003032_090 Hb_185274_020--Hb_003032_090 Hb_000029_380 Hb_000029_380 Hb_185274_020--Hb_000029_380 Hb_185274_010 Hb_185274_010 Hb_185274_020--Hb_185274_010 Hb_001083_040--Hb_000156_240 Hb_103465_010 Hb_103465_010 Hb_001083_040--Hb_103465_010 Hb_004542_030 Hb_004542_030 Hb_001083_040--Hb_004542_030 Hb_001135_190 Hb_001135_190 Hb_001083_040--Hb_001135_190 Hb_001674_050 Hb_001674_050 Hb_001083_040--Hb_001674_050 Hb_088080_030 Hb_088080_030 Hb_189099_020--Hb_088080_030 Hb_062192_030 Hb_062192_030 Hb_189099_020--Hb_062192_030 Hb_189099_020--Hb_034168_010 Hb_000920_020 Hb_000920_020 Hb_189099_020--Hb_000920_020 Hb_041813_030 Hb_041813_030 Hb_189099_020--Hb_041813_030 Hb_001338_080 Hb_001338_080 Hb_189099_020--Hb_001338_080 Hb_034168_010--Hb_000920_020 Hb_004374_090 Hb_004374_090 Hb_034168_010--Hb_004374_090 Hb_062192_020 Hb_062192_020 Hb_034168_010--Hb_062192_020 Hb_002551_030 Hb_002551_030 Hb_034168_010--Hb_002551_030 Hb_034168_010--Hb_062192_030 Hb_041813_060--Hb_000029_380 Hb_000574_330 Hb_000574_330 Hb_041813_060--Hb_000574_330 Hb_005154_090 Hb_005154_090 Hb_041813_060--Hb_005154_090 Hb_041813_040 Hb_041813_040 Hb_041813_060--Hb_041813_040 Hb_001295_080 Hb_001295_080 Hb_041813_060--Hb_001295_080 Hb_072212_020 Hb_072212_020 Hb_062273_010--Hb_072212_020 Hb_042463_020 Hb_042463_020 Hb_062273_010--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_062273_010--Hb_034168_070 Hb_062273_010--Hb_062192_030 Hb_104735_020 Hb_104735_020 Hb_062273_010--Hb_104735_020 Hb_062273_010--Hb_189099_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0748095 0.114136 0.0455062 0.0187539 0.03289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0624029 0.0269597 1.17995

CAGE analysis