Hb_000920_020

Information

Type -
Description -
Location Contig920: 15353-20608
Sequence    

Annotation

kegg
ID sot:102595311
description uncharacterized LOC102595311
nr
ID CAE05990.1
description OSJNBa0004L19.22 [Oryza sativa Japonica Group]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID Q60E20
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0004B23.3 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62379: 6460-24379 , PASA_asmbl_62380: 6626-22858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_020 0.0 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
2 Hb_034168_010 0.1151094213 - - hypothetical protein [Azospirillum sp. CAG:260]
3 Hb_042463_070 0.1191196424 - - 60S ribosomal protein L16, putative [Ricinus communis]
4 Hb_088080_030 0.1226616778 - - ribosomal protein S4 [Hevea brasiliensis]
5 Hb_189099_020 0.1226716759 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
6 Hb_041813_030 0.1238642924 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
7 Hb_019253_040 0.1282565334 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001338_080 0.1346147256 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
9 Hb_003746_020 0.1349794832 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
10 Hb_077242_020 0.1355204965 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
11 Hb_013420_050 0.1356484638 - - hypothetical protein (mitochondrion) [Vicia faba]
12 Hb_000879_260 0.1417314004 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
13 Hb_012528_040 0.1510821395 - - -
14 Hb_001490_020 0.1521034382 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_156746_010 0.1528841205 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
16 Hb_062192_030 0.1562116024 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
17 Hb_004542_030 0.1575510091 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
18 Hb_000123_070 0.1577232344 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
19 Hb_042463_030 0.1585301652 - - unknown [Lotus japonicus]
20 Hb_034168_070 0.1594691372 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_000920_020 Hb_000920_020 Hb_034168_010 Hb_034168_010 Hb_000920_020--Hb_034168_010 Hb_042463_070 Hb_042463_070 Hb_000920_020--Hb_042463_070 Hb_088080_030 Hb_088080_030 Hb_000920_020--Hb_088080_030 Hb_189099_020 Hb_189099_020 Hb_000920_020--Hb_189099_020 Hb_041813_030 Hb_041813_030 Hb_000920_020--Hb_041813_030 Hb_019253_040 Hb_019253_040 Hb_000920_020--Hb_019253_040 Hb_034168_010--Hb_189099_020 Hb_004374_090 Hb_004374_090 Hb_034168_010--Hb_004374_090 Hb_062192_020 Hb_062192_020 Hb_034168_010--Hb_062192_020 Hb_002551_030 Hb_002551_030 Hb_034168_010--Hb_002551_030 Hb_062192_030 Hb_062192_030 Hb_034168_010--Hb_062192_030 Hb_042463_070--Hb_041813_030 Hb_156746_010 Hb_156746_010 Hb_042463_070--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_042463_070--Hb_077242_020 Hb_013420_050 Hb_013420_050 Hb_042463_070--Hb_013420_050 Hb_006040_030 Hb_006040_030 Hb_042463_070--Hb_006040_030 Hb_012163_050 Hb_012163_050 Hb_042463_070--Hb_012163_050 Hb_088080_030--Hb_189099_020 Hb_003746_020 Hb_003746_020 Hb_088080_030--Hb_003746_020 Hb_088080_030--Hb_062192_030 Hb_072212_020 Hb_072212_020 Hb_088080_030--Hb_072212_020 Hb_088080_030--Hb_041813_030 Hb_189099_020--Hb_062192_030 Hb_189099_020--Hb_041813_030 Hb_001338_080 Hb_001338_080 Hb_189099_020--Hb_001338_080 Hb_041813_030--Hb_156746_010 Hb_041813_030--Hb_077242_020 Hb_041813_030--Hb_006040_030 Hb_041813_030--Hb_062192_030 Hb_041813_030--Hb_013420_050 Hb_007645_060 Hb_007645_060 Hb_019253_040--Hb_007645_060 Hb_182972_020 Hb_182972_020 Hb_019253_040--Hb_182972_020 Hb_004811_010 Hb_004811_010 Hb_019253_040--Hb_004811_010 Hb_051924_010 Hb_051924_010 Hb_019253_040--Hb_051924_010 Hb_151890_020 Hb_151890_020 Hb_019253_040--Hb_151890_020 Hb_019253_040--Hb_001338_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0043201 0.0369256 0.0907226 0.0366588 0.00432261 0.0155337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0230984 0.0296088 0.0762085 1.8007

CAGE analysis