Hb_088080_030

Information

Type -
Description -
Location Contig88080: 4798-6671
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00040
description rps4; ribosomal protein S4
nr
ID YP_004327664.1
description ribosomal protein S4 [Hevea brasiliensis]
swissprot
ID A4QLT5
description 30S ribosomal protein S4, chloroplastic OS=Nasturtium officinale GN=rps4 PE=3 SV=1
trembl
ID F2X0B8
description 30S ribosomal protein S4, chloroplastic OS=Hevea brasiliensis GN=rps4 PE=3 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein s4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61431: 4246-5776 , PASA_asmbl_61432: 6930-8466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088080_030 0.0 - - ribosomal protein S4 [Hevea brasiliensis]
2 Hb_189099_020 0.0939203003 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
3 Hb_000920_020 0.1226616778 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
4 Hb_003746_020 0.1329064102 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
5 Hb_062192_030 0.1364357788 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
6 Hb_072212_020 0.1429758245 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
7 Hb_041813_030 0.1478447721 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
8 Hb_042463_070 0.1484399546 - - 60S ribosomal protein L16, putative [Ricinus communis]
9 Hb_034168_010 0.1527080076 - - hypothetical protein [Azospirillum sp. CAG:260]
10 Hb_000699_080 0.1572539581 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
11 Hb_000879_260 0.1644907104 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
12 Hb_003336_020 0.1645515547 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
13 Hb_101733_010 0.1689047926 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012940_020 0.1691172539 - - zeaxanthin epoxidase, putative [Ricinus communis]
15 Hb_042463_030 0.1715326252 - - unknown [Lotus japonicus]
16 Hb_002686_060 0.1722236509 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005154_090 0.1738042863 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_004987_030 0.1769243235 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
19 Hb_000012_440 0.1769721702 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
20 Hb_159305_010 0.1778462149 - - rpl2 [Jatropha curcas]

Gene co-expression network

sample Hb_088080_030 Hb_088080_030 Hb_189099_020 Hb_189099_020 Hb_088080_030--Hb_189099_020 Hb_000920_020 Hb_000920_020 Hb_088080_030--Hb_000920_020 Hb_003746_020 Hb_003746_020 Hb_088080_030--Hb_003746_020 Hb_062192_030 Hb_062192_030 Hb_088080_030--Hb_062192_030 Hb_072212_020 Hb_072212_020 Hb_088080_030--Hb_072212_020 Hb_041813_030 Hb_041813_030 Hb_088080_030--Hb_041813_030 Hb_189099_020--Hb_062192_030 Hb_034168_010 Hb_034168_010 Hb_189099_020--Hb_034168_010 Hb_189099_020--Hb_000920_020 Hb_189099_020--Hb_041813_030 Hb_001338_080 Hb_001338_080 Hb_189099_020--Hb_001338_080 Hb_000920_020--Hb_034168_010 Hb_042463_070 Hb_042463_070 Hb_000920_020--Hb_042463_070 Hb_000920_020--Hb_041813_030 Hb_019253_040 Hb_019253_040 Hb_000920_020--Hb_019253_040 Hb_003746_020--Hb_000920_020 Hb_000710_160 Hb_000710_160 Hb_003746_020--Hb_000710_160 Hb_003746_020--Hb_189099_020 Hb_062192_060 Hb_062192_060 Hb_003746_020--Hb_062192_060 Hb_154430_010 Hb_154430_010 Hb_003746_020--Hb_154430_010 Hb_062192_030--Hb_041813_030 Hb_062192_030--Hb_042463_070 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070 Hb_062273_010 Hb_062273_010 Hb_072212_020--Hb_062273_010 Hb_072212_020--Hb_062192_030 Hb_042463_020 Hb_042463_020 Hb_072212_020--Hb_042463_020 Hb_072212_020--Hb_189099_020 Hb_072212_020--Hb_034168_070 Hb_041813_030--Hb_042463_070 Hb_156746_010 Hb_156746_010 Hb_041813_030--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_006040_030 Hb_006040_030 Hb_041813_030--Hb_006040_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144926 0.897912 0.900234 0.98459 0.273892 0.154897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.264945 0.624441 1.23619 1.12406 25.9224

CAGE analysis