Hb_013420_050

Information

Type -
Description -
Location Contig13420: 10342-10806
Sequence    

Annotation

kegg
ID csv:101221502
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like
nr
ID AGC78908.1
description hypothetical protein (mitochondrion) [Vicia faba]
swissprot
ID Q36450
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1
trembl
ID R4IUK7
description Uncharacterized protein OS=Vicia faba GN=nad7 PE=4 SV=1
Gene Ontology
ID GO:0016651
description nadh dehydrogenase subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09721: 8704-10328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_050 0.0 - - hypothetical protein (mitochondrion) [Vicia faba]
2 Hb_156746_010 0.0858846347 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
3 Hb_006040_020 0.0925864237 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
4 Hb_171685_080 0.0973351332 - - unknown [Allium cepa]
5 Hb_006040_010 0.0980427089 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
6 Hb_042463_070 0.0985156129 - - 60S ribosomal protein L16, putative [Ricinus communis]
7 Hb_006040_030 0.1049674324 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
8 Hb_041813_030 0.1086857102 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
9 Hb_010053_060 0.1247318979 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_004987_040 0.1271964441 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_012163_050 0.1276254413 - - ATPase subunit [Medicago truncatula]
12 Hb_013420_020 0.1285474354 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001490_020 0.1285925907 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_077242_020 0.1291378836 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
15 Hb_008085_020 0.1311565311 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
16 Hb_171685_060 0.1330496664 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
17 Hb_004375_020 0.1336913819 - - hypothetical protein VITISV_034560 [Vitis vinifera]
18 Hb_000920_020 0.1356484638 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
19 Hb_003688_030 0.1359563173 - - NADH dehydrogenase 2-like ORF 180
20 Hb_010053_050 0.1367737199 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_013420_050 Hb_013420_050 Hb_156746_010 Hb_156746_010 Hb_013420_050--Hb_156746_010 Hb_006040_020 Hb_006040_020 Hb_013420_050--Hb_006040_020 Hb_171685_080 Hb_171685_080 Hb_013420_050--Hb_171685_080 Hb_006040_010 Hb_006040_010 Hb_013420_050--Hb_006040_010 Hb_042463_070 Hb_042463_070 Hb_013420_050--Hb_042463_070 Hb_006040_030 Hb_006040_030 Hb_013420_050--Hb_006040_030 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_042463_070 Hb_041813_030 Hb_041813_030 Hb_156746_010--Hb_041813_030 Hb_012163_050 Hb_012163_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020 Hb_006040_020--Hb_006040_010 Hb_006040_020--Hb_006040_030 Hb_006040_020--Hb_171685_080 Hb_004987_040 Hb_004987_040 Hb_006040_020--Hb_004987_040 Hb_008085_020 Hb_008085_020 Hb_006040_020--Hb_008085_020 Hb_171685_080--Hb_006040_010 Hb_003688_030 Hb_003688_030 Hb_171685_080--Hb_003688_030 Hb_171685_080--Hb_008085_020 Hb_171685_080--Hb_006040_030 Hb_006040_010--Hb_008085_020 Hb_006040_010--Hb_006040_030 Hb_007645_020 Hb_007645_020 Hb_006040_010--Hb_007645_020 Hb_006040_010--Hb_003688_030 Hb_042463_070--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_006040_030 Hb_042463_070--Hb_012163_050 Hb_006040_030--Hb_041813_030 Hb_006040_030--Hb_077242_020 Hb_006040_030--Hb_012163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166061 0.480391 0.705935 0.159583 0 0.329211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.595711 1.69614 47.9235

CAGE analysis