Hb_012163_050

Information

Type -
Description -
Location Contig12163: 44292-47084
Sequence    

Annotation

kegg
ID mtr:MTR_6g043020
description ATPase subunit
nr
ID XP_003619161.1
description ATPase subunit [Medicago truncatula]
swissprot
ID Q04614
description NADH-ubiquinone oxidoreductase chain 4L OS=Arabidopsis thaliana GN=ND4L PE=2 SV=2
trembl
ID E9P2A0
description NADH dehydrogenase subunit 4L OS=Ricinus communis GN=nad4L PE=3 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase subunit 4l

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06589: 45465-46370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012163_050 0.0 - - ATPase subunit [Medicago truncatula]
2 Hb_171685_060 0.0787985037 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
3 Hb_013420_020 0.0864587524 - - conserved hypothetical protein [Ricinus communis]
4 Hb_156746_010 0.0884102849 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
5 Hb_042463_030 0.0967088484 - - unknown [Lotus japonicus]
6 Hb_006040_030 0.1003839015 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
7 Hb_042463_070 0.110925205 - - 60S ribosomal protein L16, putative [Ricinus communis]
8 Hb_041813_030 0.1112176355 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
9 Hb_013420_050 0.1276254413 - - hypothetical protein (mitochondrion) [Vicia faba]
10 Hb_004643_010 0.1281743502 - - cytochrome B, putative [Ricinus communis]
11 Hb_013420_090 0.1285241906 - - BnaCnng13090D [Brassica napus]
12 Hb_034168_070 0.1316890238 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
13 Hb_042463_020 0.1338111411 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027357_010 0.135148645 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_077242_020 0.137151692 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
16 Hb_006040_020 0.1390600698 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
17 Hb_171685_080 0.1417069246 - - unknown [Allium cepa]
18 Hb_000879_260 0.1419776528 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
19 Hb_079902_010 0.144828126 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
20 Hb_000373_140 0.1487376656 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]

Gene co-expression network

sample Hb_012163_050 Hb_012163_050 Hb_171685_060 Hb_171685_060 Hb_012163_050--Hb_171685_060 Hb_013420_020 Hb_013420_020 Hb_012163_050--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_012163_050--Hb_156746_010 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_006040_030 Hb_006040_030 Hb_012163_050--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_012163_050--Hb_042463_070 Hb_171685_060--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_171685_060--Hb_004643_010 Hb_171685_060--Hb_006040_030 Hb_171685_060--Hb_013420_020 Hb_041813_030 Hb_041813_030 Hb_171685_060--Hb_041813_030 Hb_013420_020--Hb_156746_010 Hb_013420_020--Hb_006040_030 Hb_027357_010 Hb_027357_010 Hb_013420_020--Hb_027357_010 Hb_171685_080 Hb_171685_080 Hb_013420_020--Hb_171685_080 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_000879_260 Hb_000879_260 Hb_042463_030--Hb_000879_260 Hb_042463_030--Hb_006040_030 Hb_042463_030--Hb_171685_060 Hb_042463_030--Hb_041813_030 Hb_042463_030--Hb_156746_010 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_042463_070--Hb_041813_030 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.014307 0.0925442 0.0213035 0.0114417 0.0133995 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0962449 0.040977 2.94676

CAGE analysis