Hb_004643_010

Information

Type -
Description -
Location Contig4643: 7110-7343
Sequence    

Annotation

kegg
ID rcu:RCOM_2029410
description cytochrome B, putative
nr
ID XP_002535291.1
description cytochrome B, putative [Ricinus communis]
swissprot
ID P05718
description Cytochrome b OS=Vicia faba GN=MT-CYB PE=3 SV=2
trembl
ID B9TAM2
description Cytochrome B, putative OS=Ricinus communis GN=RCOM_2021660 PE=4 SV=1
Gene Ontology
ID GO:0005743
description apocytochrome b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004643_010 0.0 - - cytochrome B, putative [Ricinus communis]
2 Hb_171685_060 0.1050882604 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
3 Hb_034168_070 0.1136396227 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
4 Hb_156746_010 0.127763838 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
5 Hb_012163_050 0.1281743502 - - ATPase subunit [Medicago truncatula]
6 Hb_001508_010 0.1328128874 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006040_030 0.1374341028 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
8 Hb_004208_040 0.1398983636 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
9 Hb_171685_080 0.1418046641 - - unknown [Allium cepa]
10 Hb_000373_140 0.1428733194 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
11 Hb_009193_050 0.1452875255 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
12 Hb_079902_010 0.1455018367 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
13 Hb_002553_030 0.1484349325 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
14 Hb_004987_040 0.1493388724 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_003688_030 0.1506002438 - - NADH dehydrogenase 2-like ORF 180
16 Hb_004375_020 0.1508840799 - - hypothetical protein VITISV_034560 [Vitis vinifera]
17 Hb_003157_020 0.1524388804 - - PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
18 Hb_013420_050 0.1577196761 - - hypothetical protein (mitochondrion) [Vicia faba]
19 Hb_077242_020 0.1582347826 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
20 Hb_013420_020 0.1584625561 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004643_010 Hb_004643_010 Hb_171685_060 Hb_171685_060 Hb_004643_010--Hb_171685_060 Hb_034168_070 Hb_034168_070 Hb_004643_010--Hb_034168_070 Hb_156746_010 Hb_156746_010 Hb_004643_010--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_004643_010--Hb_012163_050 Hb_001508_010 Hb_001508_010 Hb_004643_010--Hb_001508_010 Hb_006040_030 Hb_006040_030 Hb_004643_010--Hb_006040_030 Hb_171685_060--Hb_012163_050 Hb_171685_060--Hb_156746_010 Hb_171685_060--Hb_006040_030 Hb_013420_020 Hb_013420_020 Hb_171685_060--Hb_013420_020 Hb_041813_030 Hb_041813_030 Hb_171685_060--Hb_041813_030 Hb_034168_070--Hb_156746_010 Hb_042463_020 Hb_042463_020 Hb_034168_070--Hb_042463_020 Hb_034168_070--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_034168_070--Hb_042463_070 Hb_034168_070--Hb_012163_050 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_156746_010--Hb_013420_020 Hb_012163_050--Hb_013420_020 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_012163_050--Hb_006040_030 Hb_012163_050--Hb_042463_070 Hb_079902_010 Hb_079902_010 Hb_001508_010--Hb_079902_010 Hb_000373_140 Hb_000373_140 Hb_001508_010--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_001508_010--Hb_101462_010 Hb_002553_030 Hb_002553_030 Hb_001508_010--Hb_002553_030 Hb_002551_030 Hb_002551_030 Hb_001508_010--Hb_002551_030 Hb_077242_020 Hb_077242_020 Hb_001508_010--Hb_077242_020 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_006040_030--Hb_041813_030 Hb_006040_030--Hb_077242_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67667 2.38341 1.46542 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.754704 0.292706 68.9331

CAGE analysis